Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00381 ATGATTGATGGTATACATGTAGAAATTATGCTTATAAATACCATCTATGCAATGGGTCATAGATTGGTGTTAGATTATCAAGTTCAGTCATTTCGATTTCAAATTTGCTTCTTCTCCAAAGCACATCCTTCACTTCTTTCCTTCATTCGTCTTCCCGTGTGCAGTAGCTTCTCTTTACTCTTTCAAAGCACTATCCGTTTGTTCTTCTCTTGCAGAAGAAGCATCGGATCCACACAGTTTGAACGTTCTATTATCATTTCTCACATCATCACAATGCAAGACATGTGGAATGTTCCTCCGGGTTTCAGACCCTCAAAATCTGCACCATCTTCTCCTGCGAAGCCTCTTGGAGCAGTTCTCAGAACGCGCTCTGAGTCCTTCCATGTCACTCACAAGGTCCCAGTTGGTGACACTCCTTACGTCAGAGCAAAAAACGTTCAGTTGGTGGATAAGGACCCGGAGAAAGCAATTCCGCTGTTTTGGGCAGCCATTAATGCGGGAGATAGAGTGGACAGTGCTTTGAAAGATATGGCTATTGTCATGAAGCAGCAAAATCGGGCTGGAGAAGCCATTGAAGCCATTAAATCTCTTCGTAGTAGATGTTCAGATCAAGCCCAAGAATCTCTTGATAACATCCTCTTGGATCTTTACAAGAGGTGTGGAAGACTTGATGACCAAATAGCCCTCTTGAAGCATAAGTTGTACTTAATTCAACAAGGGTTGGCATTCAATGGTAAGCGCACAAAGACTGCAAGATCTCAAGGGAAGAAGTTTCAAGTCTCTGTGGAGCAAGAAGCTACCAGATTGCTGGGAAACTTGGGATGGGCTCTGATGCAGCAGAACAACTACATTGAAGCAGAAGAGGCATATCGCCGCGCACTATCTATAGCTCCTGACAACAATAAGATGTGCAATCTAGGCATTTGTTTGATGAAGCAAGGAAGAATTGGTGAGGCAAAAGAGACACTGTACCGGGTAAAGCCTGCAGTTATGGATGGCCCCAGAGGCTCAGATTCTCATTTGAAAGCCTATGAAAGGGCACAGCAGATGCTGAAAGACCTTGAATCTGAGATGATGAACAAGGGAGTTGATAGGATTGAACAAAGCAGGCTCTTTGAGGCCTTTTTGGGTTCTTCATCAATATGGCAACCCCAGCCTTGCAAGGACCACCACACAACCTTGTCAGCAGCAACAAATTCAGCAAGAAATCATGAAGATTTTGCTGATGAGAACATCAATTCCAACATAGTGACAAAAAATCACACGACATTGCCCCCGTCTAAAGCTACCTCTACTGCTACCAACAAACAAATCATTGCCATGTTGGGGAACTCACTCAACGTTGCAGCTCCTCCGTTTTATGCATCAAAATCGGTGTTGAGAGAACCATTTGAGAACCAGATCTCTGAGACCCTTAAGAGAACAAGGTCTGGAAATGCTGCAGGGTCCATGAGAGTAGTTAGTGATGTGAAGGAAAGCAACAACAAGTTGCATGTGGAATTAGGAGTGGCAGTGCCAGAGAACAAAACAAGAAGACTCTCATCAGAGGATGGTGAGAAGAACAAGTTAACAGATTTGTTACCTGATGATGATGACTTTGAAGAGGCCATTCTAGCTGCAATTTTGGGACCCTCCAATGATAATAAAGCCAATGAGACAAGCAGAATCTTGCAGAGGAATAATGACAAGAGGCTTAAGGTTTTTAAGGACATCACACTATCTCTGAGTCCAAGAGCCTGA 1740 0.4356 MIDGIHVEIMLINTIYAMGHRLVLDYQVQSFRFQICFFSKAHPSLLSFIRLPVCSSFSLLFQSTIRLFFSCRRSIGSTQFERSIIISHIITMQDMWNVPPGFRPSKSAPSSPAKPLGAVLRTRSESFHVTHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAGEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEEAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLYRVKPAVMDGPRGSDSHLKAYERAQQMLKDLESEMMNKGVDRIEQSRLFEAFLGSSSIWQPQPCKDHHTTLSAATNSARNHEDFADENINSNIVTKNHTTLPPSKATSTATNKQIIAMLGNSLNVAAPPFYASKSVLREPFENQISETLKRTRSGNAAGSMRVVSDVKESNNKLHVELGVAVPENKTRRLSSEDGEKNKLTDLLPDDDDFEEAILAAILGPSNDNKANETSRILQRNNDKRLKVFKDITLSLSPRA 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00381 579 SUPERFAMILY TPR-like 148 374 IPR011990 GO:0005515
Phco8g00381 579 Coils Coil 337 364 - -
Phco8g00381 579 Pfam Tetratricopeptide repeat 269 300 IPR001440 GO:0005515
Phco8g00381 579 ProSiteProfiles TPR repeat region circular profile. 267 300 - -
Phco8g00381 579 PANTHER PROTEIN POLLENLESS 3-LIKE 2 104 573 IPR044961 -
Phco8g00381 579 Gene3D Tetratricopeptide repeat domain 145 328 IPR011990 GO:0005515
Phco8g00381 579 ProSiteProfiles TPR repeat profile. 267 300 IPR019734 GO:0005515
Phco8g00381 579 SMART tpr_5 267 300 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00381 Phco-Chr8 3475271 3478992 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00381 8 3475271 3478992 Phco8g00381 8 3475271 3478992 ECH