Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00331 ATGCAAGCAAAATTTTCATATGCCTGTAATATGATAGAGTTGCAGTGCAGCCCCCACCCTACCCCTACTTTGGTCTTTTTTAAGGAATTGTCTTTTTATTCTTCTGGATTAATCATATTTATTCAATACTATTTACTTTTGAATTCATGGGTTTGTGAATTTGAACAACTGTTATTCGCAGGTCACATTAGAGCTGTTTGTGATCTGCTTCCATTACAACCAAAAGATAAAACGCTGGATCCATATCGTCTTCCTCCGTCTACGGAAGCGCCTTTCGCTCGATCCTTCGCCGATCTCGGAAACATGTACGGTCCCCGAGGGGCAATGTTGGGAAGCGGGGGGGGTTCGGACGGGTACGAGGTTGGCTCAAAGAGACAAAGAATGATGGAATCAAATCCATACTTCGCAGTGAGCAGCGGGACAGGCAGCTTACCTTATGGATATGCTGGTGGCTTTCAGCCCCCTCCCTTTCCTGTGGTTCGTCTCAGGGGGCTTCCATTCAACTGTACCGACATTGACATCTTGAAGTTTTTTGCTGGACTGACCATTGTCGATGTGTTGCTGGTGAACAAGAGTGGACGGTTCTCGGGAGAGGCCTTCGTGGTCTTTGCAGGAGCAATGCAGGTTGAGTTTGCTTTACAGAGAGATCGCCAGAACATGGGTCGCCGGTATGTGGAAGTGTTCAGGTGTAAGAAGCAGGATTATTATAATGCTGTTGCTGCTGAGATCAATTACGAAGGAATATATGATAATGATTACCATGGTAGTAGTCCTCCACCCTCCCGGTCAAAGAGGTTCAGTGATAAAGATCAAATGGAGTACACTGAGATATTGAAGATGCGTGGCCTTCCCTTCCAAGTTACAAAATCTCAAATTGTTGAATTCTTTAAAGATTTCAACCTTATAGAAGACAGGGTACACATTGCATGTCGCCCTGATGGGAAAGCTACTGGAGAGGCATACGTGGAGTTTGTTTCTGCTGAGGAGGCCAAGAGGGCAATGTCCAAGGATAAAATGACCATAGGATCAAGGTACGTGGAGCTGTTCCCTTCTACTCCAGATGAAGCTAGACGGGCAGAGTCAAGATCAAGGCAGTGA 1098 0.4572 MQAKFSYACNMIELQCSPHPTPTLVFFKELSFYSSGLIIFIQYYLLLNSWVCEFEQLLFAGHIRAVCDLLPLQPKDKTLDPYRLPPSTEAPFARSFADLGNMYGPRGAMLGSGGGSDGYEVGSKRQRMMESNPYFAVSSGTGSLPYGYAGGFQPPPFPVVRLRGLPFNCTDIDILKFFAGLTIVDVLLVNKSGRFSGEAFVVFAGAMQVEFALQRDRQNMGRRYVEVFRCKKQDYYNAVAAEINYEGIYDNDYHGSSPPPSRSKRFSDKDQMEYTEILKMRGLPFQVTKSQIVEFFKDFNLIEDRVHIACRPDGKATGEAYVEFVSAEEAKRAMSKDKMTIGSRYVELFPSTPDEARRAESRSRQ 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00331 365 CDD RRM_hnRNPH_ESRPs_RBM12_like 277 349 - -
Phco8g00331 365 Gene3D - 157 241 IPR012677 -
Phco8g00331 365 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED 153 357 - -
Phco8g00331 365 Gene3D - 260 365 IPR012677 -
Phco8g00331 365 CDD RRM_hnRNPH_ESRPs_RBM12_like 159 228 - -
Phco8g00331 365 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 161 223 IPR000504 GO:0003723
Phco8g00331 365 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 280 346 IPR000504 GO:0003723
Phco8g00331 365 SMART rrm1_1 159 228 IPR000504 GO:0003723
Phco8g00331 365 SMART rrm1_1 277 349 IPR000504 GO:0003723
Phco8g00331 365 SUPERFAMILY RNA-binding domain, RBD 275 362 IPR035979 GO:0003676
Phco8g00331 365 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 276 353 IPR000504 GO:0003723
Phco8g00331 365 SUPERFAMILY RNA-binding domain, RBD 150 237 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00331 Phco-Chr8 3067738 3072946 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00331 8 3067738 3072946 Phco8g00331 8 3067738 3072946 ECH