Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00272 ATGGCCACGCTGCTCAGAAAACTCTGCGAATCCGCGTCGCTCAAGCGATCGGGTACCGCTCCGAACCCGAACCCGAACCCATCATCGGAACGCGCGCCCTCTCCTCTGGGCGCCTTCGACCCTCTCCCCGCTGACATACTCATGCAAATCGTGCGACTCTTGGGCCCCAAACACGCCGCCAGACTCAGCCTCGTCAGCAAGTCGTGGCGATCCCTTGTCTCCGACAACGACCTCTGGGTGCACTTCCTCCGCACCCACCACCCTCACTCGGCGCTCTTCGCCGAAACCACTCTTAGCTCCGGCTACCCTCTTCCGACCTTGGCTGCTCAGAGCTCGCCACGTGGCTCGCTTCAGCATGTTTTCGCCCTCCGTGAACGCCTCCCTCCGTCCGTTGTCATCGACGGGGGTTCTGGCTATTGCAAATTCGGTTGGAGCAAAGACTCTTATCCTTCCGGGCGATTTGCGACCTTTCTGGAATTTGGTAACGTTGAAACGCCCATGTATACTAGACTTCGACATTTTTTCGGGACTATCTATAACAGGATGCAGGTGAAACCAAGTTCTCAACCAGCTGTTGTTTCTATACCAATTTGTCACTATGATGATACTGAATCAGCCAAAGCATCAAGACAGCAGCTTAAAGAAGCAATCTATGTTGCCTTGTTTGACATGAATGTCCCTGCTGTTTGTGCTCTCAATCAGGGGACTTTAGCTCTGTATGCTGCAAAACAAACTTCTGGGATTGCTGTTAATATAGGCTTTCAAGTGACATCTATTGTTCCAATTTTAAATGGTAAAGTGATGCGAAAGGTGGGTGTGGAAGTTGTGGGGCTGGGAGCACTAAAGCTTACTGGATTTCTTAGAAAACAAATGCAAGAGAACAACATAAGTTTTGAATCTCTATACACTGTTCGCACTCTGAAAGAGAAGCTATGTTATGTTGCTGCTGACTACGAAGCTGAGCTATTGAAAGATACACAGGCATCATTTGAAGCTGTAGAAGGGTTGTTTACACTTTCAAAAGAGCGGTTTCAAACAGGGGAGATCTTATTCCAGCCACGACTTGCTGGGGTGCGAGCAATGGGTTTGCACCAGGCCATTGCACTTTGTATGGATCATTGCTATTCTGCAGAATTAGCAGTTAACAAGGATTGGTACAAAACTGTTGTCTTATCAGGGGGAACTGCCTGTTTACCTGGTTTAGCAGAAAGGTTAGAAAAGGAGCTTCATTCGTCACTTCCTCCTTCTATATCCAATGGAATTAAAGTCATACCTCCTCCATTTGGTGTGGATACTGCATGGTTTGGTGGAACGATTATTGGCAGTTTGAGCACCTTTCCTGGCCCATGGTGTACCACAAAAAAGCAATTCCGTCAGAAGTCTAAACTTAACCGCATTTGGTGA 1404 0.4829 MATLLRKLCESASLKRSGTAPNPNPNPSSERAPSPLGAFDPLPADILMQIVRLLGPKHAARLSLVSKSWRSLVSDNDLWVHFLRTHHPHSALFAETTLSSGYPLPTLAAQSSPRGSLQHVFALRERLPPSVVIDGGSGYCKFGWSKDSYPSGRFATFLEFGNVETPMYTRLRHFFGTIYNRMQVKPSSQPAVVSIPICHYDDTESAKASRQQLKEAIYVALFDMNVPAVCALNQGTLALYAAKQTSGIAVNIGFQVTSIVPILNGKVMRKVGVEVVGLGALKLTGFLRKQMQENNISFESLYTVRTLKEKLCYVAADYEAELLKDTQASFEAVEGLFTLSKERFQTGEILFQPRLAGVRAMGLHQAIALCMDHCYSAELAVNKDWYKTVVLSGGTACLPGLAERLEKELHSSLPPSISNGIKVIPPPFGVDTAWFGGTIIGSLSTFPGPWCTTKKQFRQKSKLNRIW 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00272 467 SUPERFAMILY Actin-like ATPase domain 245 454 IPR043129 -
Phco8g00272 467 SUPERFAMILY Actin-like ATPase domain 129 250 IPR043129 -
Phco8g00272 467 SMART fbox_2 42 82 IPR001810 GO:0005515
Phco8g00272 467 Gene3D - 35 121 - -
Phco8g00272 467 PANTHER ACTIN 171 459 IPR004000 -
Phco8g00272 467 Gene3D - 131 459 - -
Phco8g00272 467 Pfam F-box-like 42 81 IPR001810 GO:0005515
Phco8g00272 467 CDD F-box_AtARP8-like 38 82 - -
Phco8g00272 467 Gene3D Actin; Chain A, domain 4 278 360 - -
Phco8g00272 467 ProSiteProfiles F-box domain profile. 36 82 IPR001810 GO:0005515
Phco8g00272 467 CDD NBD_sugar-kinase_HSP70_actin 131 275 - -
Phco8g00272 467 SMART actin_3 128 457 IPR004000 -
Phco8g00272 467 MobiDBLite consensus disorder prediction 13 35 - -
Phco8g00272 467 Pfam Actin 179 453 IPR004000 -
Phco8g00272 467 Gene3D - 235 432 - -
Phco8g00272 467 SUPERFAMILY F-box domain 26 100 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00272 Phco-Chr8 2499199 2507797 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00272 8 2499199 2507797 Phco8g00272 8 2499199 2507797 ECH