Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00251 ATGAGAATCACTACCAAGTCAAAACCCCTTTACTTTGCCCTAAGTCTCTTAGGAATCCTTGATTTCTTAAGCTTTTCTCAAGCGACTACTCATCTTCTCATTCACCGTGATTCCCCTTTATCTCCCCTCTACGACCCTTCAAGCACCCACTTTGATCGCTTGCACAATGCTTTCCAACGCTCATTCAAGCGCATCAACCATTTCAAAGTTGCTGCTGATAACCTTAAACATGGCAGCCTACAGGCCCCTATGAAACCTGGTGGTGGAGAGTATCTCATGAAGCTCTTCATTGGAACTCCACCTGTTGAAGTAATTGGCATAGCTGACACGGGTAGTGACCTTATATGGACACAATGTTTGCCATGCATACAATGTTACAATCAAACTATTCCTCTCTTTAACCCTAGTCGTTCCAAATCATACCAGACAATACCATGCCTACCTACACTTTGCAGCAACGCACTAGGCTCAGAAAATACTCAATGTCACAATAAGACAACATGTGGTTATAGGTATTCTTATGCAGATGGTTCTCACACTGCGGGAAACCTTGCTTTTGAAACACTAACCTTAGGCATCAGCAACCCAATTTCTCTTCCAAAGCTTGTATTTGGTTGTGCACACGATACTGCTGGCATATTTGATGCGTCAGGTTCAGGCATAATTGGTCTTGGAAGTGGCAACCTTTCACTAATTTCTCAATTGGGTCCTCATTTATCTGGTGGCAAGAAATTCTCCTATTGTATGATTCCCACTACCATGATCGACAAGAATTCCACCAGCAAGATTAATTTTGGAAACGATTCTTTGGTTTCTGGACCTGAAGTCGTCACAACTCCTCTTACTATAGTTCCTGGTGGCTTTTTCTTCACATTGGAGGCCATTAGTGTAGGAAAAGAGAGGATTGAATTTGCATCCAAGGGTAATGTTACCAAAGGAAATATGGTCATTGATACTGGGACAACATTTACTCTTTTGCCATTTGGTGTTTATAGTGGTTTGGTACATGCTTTAGGTAAAGTAATAAGGGCTAAAAGGGTGCGTGATCCTAACGGTGTTCTTGACCTTTGTTATGAAAGCAGTGGCAATAATATTAAACTCCCCATTATCACAGCACATTTGAAGGGAGGGGATGTGAATTTGCAGGCAGTGAATACATTTTCCTGGGTGGAGAAGGATGTGGTATGTTTAACCATGCTTTCAAACGACATAAGTATTTTAGGAAACTTGGCTCAGACCAATTTCTTCGTAGGATATGACCTTGAGTCTCGCACTTTGTCCTTTAAGCCCACTGATTGTAGCAAGATATAA 1311 0.4165 MRITTKSKPLYFALSLLGILDFLSFSQATTHLLIHRDSPLSPLYDPSSTHFDRLHNAFQRSFKRINHFKVAADNLKHGSLQAPMKPGGGEYLMKLFIGTPPVEVIGIADTGSDLIWTQCLPCIQCYNQTIPLFNPSRSKSYQTIPCLPTLCSNALGSENTQCHNKTTCGYRYSYADGSHTAGNLAFETLTLGISNPISLPKLVFGCAHDTAGIFDASGSGIIGLGSGNLSLISQLGPHLSGGKKFSYCMIPTTMIDKNSTSKINFGNDSLVSGPEVVTTPLTIVPGGFFFTLEAISVGKERIEFASKGNVTKGNMVIDTGTTFTLLPFGVYSGLVHALGKVIRAKRVRDPNGVLDLCYESSGNNIKLPIITAHLKGGDVNLQAVNTFSWVEKDVVCLTMLSNDISILGNLAQTNFFVGYDLESRTLSFKPTDCSKI 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00251 436 Pfam Xylanase inhibitor C-terminal 288 429 IPR032799 -
Phco8g00251 436 ProSiteProfiles Peptidase family A1 domain profile. 91 429 IPR033121 -
Phco8g00251 436 SUPERFAMILY Acid proteases 86 434 IPR021109 -
Phco8g00251 436 Gene3D Acid Proteases 266 436 IPR021109 -
Phco8g00251 436 PRINTS Pepsin (A1) aspartic protease family signature 315 326 IPR001461 GO:0004190|GO:0006508
Phco8g00251 436 PRINTS Pepsin (A1) aspartic protease family signature 405 420 IPR001461 GO:0004190|GO:0006508
Phco8g00251 436 PRINTS Pepsin (A1) aspartic protease family signature 97 117 IPR001461 GO:0004190|GO:0006508
Phco8g00251 436 FunFam Aspartic proteinase CDR1 268 436 - -
Phco8g00251 436 Pfam Xylanase inhibitor N-terminal 91 267 IPR032861 -
Phco8g00251 436 Gene3D Acid Proteases 71 265 IPR021109 -
Phco8g00251 436 FunFam Probable aspartic protease At2g35615 70 266 - -
Phco8g00251 436 CDD pepsin_A_like_plant 90 433 IPR034161 -
Phco8g00251 436 PANTHER OS07G0603500 PROTEIN-RELATED 33 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00251 Phco-Chr8 2342149 2343459 Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00251 8 2342149 2343459 Phco8g00251 8 2342149 2343459 ECH