Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco8g00245 | ATGCACTCAGCAATGGACTTCACCAGGTTCTCCTCTCCTAAATCTCCACCCATCTTCACGCGACCTCTCACCTGGGTCACCTCCACCGCCCTCCGCCACCAACGCCGCCACCTTCCTTCGCCAACCCCTCCACCGCCGCCACGACCTCACCCCACTCCTCCGCAAACCACTAACCACTCCCCTCTCACCCTTCTACCCTCTGTTCTAACCACCAGAGTTCTAGACTTTTCCAAATGTAAATCCATTTTGCCCCATTTGTCCCCCCTCGAATTCGATCGTTTATTCTTCCCCATCCACCACACCGTTAACCCCATAACGACACTCGACTTCTTCCGTTTTGCCACTAACCGTTTTAAGTTCCCCTTCACCTTTCGCTCCTATTGCCTCCTCCTTCGCTCGCTCCTCGCTTCCGCTCTTTTGCCGCGCGCCAGGTCTTTGCTCACTCGTTTGATCGACGGCCACGTTCCCACGTCGTTTCACGACCGCGAGAACCGGCTCCGCGAAATAGCTTCCTCGATGTTGGAGCTGAATCAGGTTTTGGATACACGACACGGCGAATTGGATTTGTTGCTCTACATTCTCTGCTCTCGGTTCAAGGACTTCGGCTTCCGTTGCGCTTTTGATATTTTTATCATGTTTTCGAAGAAGGGCGTTTTCCCGTGTTTGAAAACTTGCAATTTTTTACTGAGCTCATTGGTGATGGCCAATGAACTTCACAAGAGTTATGAGGTGTTTGATGTCACTTGTCAGGGCGTTGTGCCCGATGTTTTCACGTTCACCACCGCAATTAACGCGTTCTGTAAGGGAGGGAGGGTTGGGGACGCTGTGGATTTGTTCCGCAAGATGGAGGAGCTCGGTGTTTCGCCGAATGTGGTTACTTACAACAATGTGATTGATGGGTTGTCCAAGAGTGGGAGGTTACAGGAGGCGTTTCGGTTTAAGGATAGGATGGTTAGGAGCAAGGTGAATCCAAGTGTGGTGACCTACGGTGCGCTCATCAATGGTTTGATGAAGATGGAGAAGTTTGAGGAGGCGAATGAAATGTTGGTGGAAATGTATAGCAAGGGTTTTGCTCCCAATGAGGTTGTGTTTAACTCGCTGATTGATGGGTACTGCAGGAAGGGAAATATGATTGAGGCATTGAGAATTAGGGATGAGATGGTATTGAAGGGCATGAAGCCTAATTCTGTTACTTTTAATACTCTTTTACAGGGTTTTTGCAGGAGCAATCAAATGGAGCAGGCTGAGCAGGTATTGGGGTACCTATTGTCTAGTGGGTTGTCTGTTAACATGGAGGCGTGTTCGAATGTGATTCATCAGTTGTTGCAAAAATCTAGGTTGGATTCGGCATTAAAAATTGTTAGAGAGTTGGTGTTAAGGAACATCAAGGCTAGTGATAGCTTGCTAACCCTGTTGGTCTGCGGACTTTGTAAAGGTGAAAAACATTTGGAGGCGGTTGAGCTTTGGTTTATGCTGGCAGATAAAGGGCTTGCTGCCAATACAGTTACCTCAAATGCGCTTCTCCATGGACTTTGTGAACGAGGGAACATGGAGGAAGTTTTCGAAATAATCAAACGAATGCTTGAGAAAGGTTTGGTACTGGATAGGATCTCATACAACACACTTATTTTTGGTTGTTGTAAATGGGGTAAAATTGATGTAGCTTTCAAACTCAAGGAAAAGATGGTTCATCAAGAATTCCAACCAGATACGTATACCTACAATTTCCTAATGAAAGGGTTGGCTGATAAGGGTGAGATAGATGATGTTCATAGGCTTTTGCATGAAGCCAAAGAATATGGCATAGTTCCCAATGTATATACACATGCAATTTTATTGGAAGGATATTGTAAGGCTGATCGGATTGAAGATGCTGTGAAATTGCTTCAGAAGTTAGTTTATGAGAAAGTAGAGCTTAGTTCTGTTGTATATAACATACTTATTGCAGCCTACTGTAGAGATGGGAATCTGACGGAAGCCTTCGAACTGTGTGATGCTATGAAAAGTGGGGGCATGCCACCTACCAATGCCACGTATTCTCCTCTAATACATGGAATGTGCTGTATTGGCCGTGTGGATGAAGCAAAGGAAATTTTTGAAAAAATGAGAAATGAAGGCTTGCTTCCAGATATATTTTGTTATACTGCTCTAATTGGTGGTTACTGTAAGTTAGGTCAGATGGACAAAGTAGGGAGTATATTACTGGAAATGTCTTCAAACAGTATACAACCTAATAAAATTACTTACACTATTATGATTGATGCGTATTGTAAATTGGGAAATGTGAAAGAAGCTACAGAACTTTTAAATCAGATGATAAGAAATGGAATAGCTCCAGATACCATCACTTACAATGCACTGCAAAAGGGATATTGCAAGGAAAGGGAGCTAGAAGTTGCTTTAAGGAGTGATCATATGTCTAACGCAGGACTGCACTTAGAAGAAGAAATTACTTATAACACATTGGTTCACAGGTTGCATCCACATACAGCAGTTATCAATAAAGAATCCTGA | 2514 | 0.4419 | MHSAMDFTRFSSPKSPPIFTRPLTWVTSTALRHQRRHLPSPTPPPPPRPHPTPPQTTNHSPLTLLPSVLTTRVLDFSKCKSILPHLSPLEFDRLFFPIHHTVNPITTLDFFRFATNRFKFPFTFRSYCLLLRSLLASALLPRARSLLTRLIDGHVPTSFHDRENRLREIASSMLELNQVLDTRHGELDLLLYILCSRFKDFGFRCAFDIFIMFSKKGVFPCLKTCNFLLSSLVMANELHKSYEVFDVTCQGVVPDVFTFTTAINAFCKGGRVGDAVDLFRKMEELGVSPNVVTYNNVIDGLSKSGRLQEAFRFKDRMVRSKVNPSVVTYGALINGLMKMEKFEEANEMLVEMYSKGFAPNEVVFNSLIDGYCRKGNMIEALRIRDEMVLKGMKPNSVTFNTLLQGFCRSNQMEQAEQVLGYLLSSGLSVNMEACSNVIHQLLQKSRLDSALKIVRELVLRNIKASDSLLTLLVCGLCKGEKHLEAVELWFMLADKGLAANTVTSNALLHGLCERGNMEEVFEIIKRMLEKGLVLDRISYNTLIFGCCKWGKIDVAFKLKEKMVHQEFQPDTYTYNFLMKGLADKGEIDDVHRLLHEAKEYGIVPNVYTHAILLEGYCKADRIEDAVKLLQKLVYEKVELSSVVYNILIAAYCRDGNLTEAFELCDAMKSGGMPPTNATYSPLIHGMCCIGRVDEAKEIFEKMRNEGLLPDIFCYTALIGGYCKLGQMDKVGSILLEMSSNSIQPNKITYTIMIDAYCKLGNVKEATELLNQMIRNGIAPDTITYNALQKGYCKERELEVALRSDHMSNAGLHLEEEITYNTLVHRLHPHTAVINKES | 837 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco8g00245 | 837 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 535 | 569 | IPR002885 | - | |
| Phco8g00245 | 837 | MobiDBLite | consensus disorder prediction | 34 | 61 | - | - | |
| Phco8g00245 | 837 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 500 | 534 | IPR002885 | - | |
| Phco8g00245 | 837 | Gene3D | Tetratricopeptide repeat domain | 224 | 342 | IPR011990 | GO:0005515 | |
| Phco8g00245 | 837 | Gene3D | Tetratricopeptide repeat domain | 690 | 835 | IPR011990 | GO:0005515 | |
| Phco8g00245 | 837 | Gene3D | Tetratricopeptide repeat domain | 586 | 689 | IPR011990 | GO:0005515 | |
| Phco8g00245 | 837 | Gene3D | Tetratricopeptide repeat domain | 479 | 585 | IPR011990 | GO:0005515 | |
| Phco8g00245 | 837 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 570 | 604 | IPR002885 | - | |
| Phco8g00245 | 837 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 675 | 709 | IPR002885 | - | |
| Phco8g00245 | 837 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 710 | 744 | IPR002885 | - | |
| Phco8g00245 | 837 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 745 | 779 | IPR002885 | - | |
| Phco8g00245 | 837 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 395 | 429 | IPR002885 | - | |
| Phco8g00245 | 837 | Pfam | PPR repeat family | 709 | 758 | IPR002885 | - | |
| Phco8g00245 | 837 | Pfam | PPR repeat family | 289 | 338 | IPR002885 | - | |
| Phco8g00245 | 837 | Pfam | PPR repeat family | 359 | 408 | IPR002885 | - | |
| Phco8g00245 | 837 | Pfam | PPR repeat family | 640 | 687 | IPR002885 | - | |
| Phco8g00245 | 837 | Pfam | PPR repeat family | 536 | 582 | IPR002885 | - | |
| Phco8g00245 | 837 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 360 | 394 | IPR002885 | - | |
| Phco8g00245 | 837 | SUPERFAMILY | HCP-like | 499 | 703 | - | - | |
| Phco8g00245 | 837 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 325 | 359 | IPR002885 | - | |
| Phco8g00245 | 837 | MobiDBLite | consensus disorder prediction | 38 | 56 | - | - | |
| Phco8g00245 | 837 | Pfam | PPR repeat | 502 | 532 | IPR002885 | - | |
| Phco8g00245 | 837 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 255 | 289 | IPR002885 | - | |
| Phco8g00245 | 837 | PANTHER | ATPASE EXPRESSION PROTEIN 3 | 30 | 562 | - | - | |
| Phco8g00245 | 837 | Pfam | PPR repeat | 251 | 283 | IPR002885 | - | |
| Phco8g00245 | 837 | Pfam | PPR repeat | 601 | 631 | IPR002885 | - | |
| Phco8g00245 | 837 | NCBIfam | pentatricopeptide repeat | 292 | 325 | IPR002885 | - | |
| Phco8g00245 | 837 | NCBIfam | pentatricopeptide repeat | 257 | 291 | IPR002885 | - | |
| Phco8g00245 | 837 | NCBIfam | pentatricopeptide repeat | 397 | 430 | IPR002885 | - | |
| Phco8g00245 | 837 | NCBIfam | pentatricopeptide repeat | 678 | 711 | IPR002885 | - | |
| Phco8g00245 | 837 | NCBIfam | pentatricopeptide repeat | 712 | 745 | IPR002885 | - | |
| Phco8g00245 | 837 | NCBIfam | pentatricopeptide repeat | 607 | 632 | IPR002885 | - | |
| Phco8g00245 | 837 | NCBIfam | pentatricopeptide repeat | 537 | 571 | IPR002885 | - | |
| Phco8g00245 | 837 | NCBIfam | pentatricopeptide repeat | 362 | 395 | IPR002885 | - | |
| Phco8g00245 | 837 | NCBIfam | pentatricopeptide repeat | 505 | 535 | IPR002885 | - | |
| Phco8g00245 | 837 | NCBIfam | pentatricopeptide repeat | 642 | 675 | IPR002885 | - | |
| Phco8g00245 | 837 | NCBIfam | pentatricopeptide repeat | 572 | 606 | IPR002885 | - | |
| Phco8g00245 | 837 | NCBIfam | pentatricopeptide repeat | 747 | 781 | IPR002885 | - | |
| Phco8g00245 | 837 | NCBIfam | pentatricopeptide repeat | 327 | 361 | IPR002885 | - | |
| Phco8g00245 | 837 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 640 | 674 | IPR002885 | - | |
| Phco8g00245 | 837 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 605 | 639 | IPR002885 | - | |
| Phco8g00245 | 837 | Gene3D | Tetratricopeptide repeat domain | 343 | 473 | IPR011990 | GO:0005515 | |
| Phco8g00245 | 837 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 290 | 324 | IPR002885 | - |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Phco8g00245 | 8 | 2302573 | 2305086 | Phco8g00245 | 8 | 2302573 | 2305086 | ECH |