Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00237 ATGAATCGTAACATGGAGGCAGTGGTGGAAAACCCCGCTAGGTCCAGGGGGTTAAAGTACGCATCCATAAACCCTAACAAACCTCAACCACCCCCAATTCCCAAACCCAACCAATTCCCCTCCCACCTCGACGCGCCCAACGTCTCCTCCACCGCGCGTGCCCTCTGCGACATCCTCACACGCGCCTCCCCTCACGACATCGAAACCGCCCTCTCGTCCTCGGGAATCGTCCCCGAGGATGACCTCATCGAAGAGGTCCTGAAACTCTCCTACAATTACCCTTCCTCCGCCGTCAAGTTCTTCCGGTGGGCCGGGCGCGGCAAAAAGCACCCGGCCCATACCTGGAACTTGATGGTCGACCTGCTGGGAAAAAACCAGCTTTTCGAGCCCATGTGGGACGCCATCAGGTCCATGAAGCAGGAAGAGAAGCTTTCTCTCTCCACCTTCGCTTCCGTCTTCCAGAGCTACTCCACTGCCGGTAGATTTAACGAGGCCGTCATGAGCTTCGACGTCATGGACAGGTACGGCGTCAAACAGGACGTGGTCGCCGTTAACTCGCTCCTCAGCGCCATTTGTAGCGAGGACAACCAAACCTCCGTGGGCCTCGAGTTTCTCGAGGGGATCAAGGCGAAGGTGTCGCCTGACAGCGACACCTTTGCCATTCTTCTCGAAGGGTGGCAGAGGGAAGGCAATGCTGCTAAAGCTAAGATCACGTTTGGTGATATGGTGGCTCTAGTTGGCTGGAATAACGGCAATGTTGCTGCCTACGACGCGTTTTTGATGACCCTCTTTCGCGCTGACCTCATGGATGATGTTGTTAGGTTCCTTCAGGTTATGAAGGACCATGATTGCTTCCCAGGTTTGAAATTCTTTACCAACGCGCTTGACGCTCTTGTCAAGCGAAACGACGCCCATCACGCTGTCCCTATGTGGGATGTGATGGTCAGTGGCGAGTTAGTGCCTAATTTGATCATGTACAATGCCATGATTGGATTGCTCTGCAACAATGTGGCTATTGATCATGCGATTCGCCTGCTCGATGAGATGGCTTTCCATGGCGCTTTTCCGGACTCCCTCACCTACAACATGATCTTTGAGTGCTTGGTGAAGAACAAGAAGGCTCGTGAGACGGAGAGCTTCTTCTTCGAGATGATCAAGAATGAATGGCCGCCCACCGGCCCTAACTGCGCTGCCGCCATTGAAATGTTGTTCGATTGTGATGACCCTGAAGCAGCACATGAAATTTGGAATTATGTTGATGAGAATCATGTCAAGCCGCTTGATGAGAGTGCGAATGCCATGCTAGTTGGACTTTGTAACTTGAGTAGATTCGCTGAGGTGAAGAGGCTGGCTGAGGATGTGCTTTATAGAAGGATCAAGGTGTATGAATCTACCATGACATTATTGAAGGATGCCTTCTATAAAGAAGGTAGAAGTGCAAGAGACAGATATGATAGTCTTTATAGGAAGTGGAAAGCTCAAGTCCAGTTGTAA 1494 0.5161 MNRNMEAVVENPARSRGLKYASINPNKPQPPPIPKPNQFPSHLDAPNVSSTARALCDILTRASPHDIETALSSSGIVPEDDLIEEVLKLSYNYPSSAVKFFRWAGRGKKHPAHTWNLMVDLLGKNQLFEPMWDAIRSMKQEEKLSLSTFASVFQSYSTAGRFNEAVMSFDVMDRYGVKQDVVAVNSLLSAICSEDNQTSVGLEFLEGIKAKVSPDSDTFAILLEGWQREGNAAKAKITFGDMVALVGWNNGNVAAYDAFLMTLFRADLMDDVVRFLQVMKDHDCFPGLKFFTNALDALVKRNDAHHAVPMWDVMVSGELVPNLIMYNAMIGLLCNNVAIDHAIRLLDEMAFHGAFPDSLTYNMIFECLVKNKKARETESFFFEMIKNEWPPTGPNCAAAIEMLFDCDDPEAAHEIWNYVDENHVKPLDESANAMLVGLCNLSRFAEVKRLAEDVLYRRIKVYESTMTLLKDAFYKEGRSARDRYDSLYRKWKAQVQL 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00237 497 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 322 356 IPR002885 -
Phco8g00237 497 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 145 179 IPR002885 -
Phco8g00237 497 Gene3D Tetratricopeptide repeat domain 315 496 IPR011990 GO:0005515
Phco8g00237 497 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 357 391 IPR002885 -
Phco8g00237 497 MobiDBLite consensus disorder prediction 25 39 - -
Phco8g00237 497 Gene3D Tetratricopeptide repeat domain 81 196 IPR011990 GO:0005515
Phco8g00237 497 Gene3D Tetratricopeptide repeat domain 197 314 IPR011990 GO:0005515
Phco8g00237 497 Pfam PPR repeat 148 177 IPR002885 -
Phco8g00237 497 NCBIfam pentatricopeptide repeat 360 392 IPR002885 -
Phco8g00237 497 Pfam PPR repeat family 321 370 IPR002885 -
Phco8g00237 497 MobiDBLite consensus disorder prediction 1 46 - -
Phco8g00237 497 PANTHER MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 109 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00237 Phco-Chr8 2252198 2253691 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00237 8 2252198 2253691 Phco8g00237 8 2252198 2253691 ECH