Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00152 ATGGCGTCCGATGCCCACACCGACAAGAACATTGTCTTCAGGAAACTCAAGGCCAAGTCTGAAAATAAGATGTGTTTCGATTGCAATGCGAAGAACCCTACCTGGGCGTCCGTCACGTATGGGATCTTCCTCTGCATCGATTGCTCCGCCGTTCATCGAAGTCTCGGCGTGCACATCAGCTTCGTGAGGTCTACAAATTTAGACTCATGGAGTCCTGAGCAATTAAAAATGATGAGCTTTGGAGGAAACAATCGTGCACAGGTTTTCTTTAAGCAACATGGTTGGACTGATGGTGGCAAAATAGAGGCTAAATTCACATCCAGAGCTGCAGACTTGTATAGGCAAATTCTTTCAAAGGAAGTGGCTAAAAGTATGGCTGAAGATGGAGGCTTGCCTTCATCACCTGTTGCTTCTCAGTCTTCCCAGGGTGTTAATGGGCTTCCTGAAGTCAGGACCAATGAAGTGCCAAAAGAAAACACTCGGGAGAAGCCTGAAAAGCCTGAAAGCACTTCTTCACCTAGGGCTTCTCACTCAGTAATTTCAAGTACTGTCAAAAAACCTATTGGTGCTAAAAAAGTTGGGAAGAGTGGGGGGCTTGGTGCTCGTAAACTCACTAAAAAGTCAAGCGAGTCTCTCTATGAGCAGAAGCCTGAGGAAGCCCCTGCTCCTGTTCCATCCTCAACTAACAATATGCCTGCTGGACCATCTCCGACATCTCGGTTTGAGTATGTAGAAAATGTCCAATCATCTGAGTTGAACACTGGAGGTTCAAATGTGATGAGTCATGTGTCTCCACCAAAGTCATCAAGCTTTTTTGCAGACTTTGGAATGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGCTCCTCCAAAGTGCAAATTCAGGAATCTGATGAGGCAAGAAGGAAGTTCTCAAATGCCAAATCTATTTCATCATCCCAATTTTTTGGGGATCATACCAAAGCTACAGATTTGGATTCTCAAGCTTCTTTGTCTAAGTTTTCGGGTTCGAGTGCCATCTCCAGTGCTGATCTTTTTGGAGACTCAAGAGACAATGCCATTGATCTTACTGCCAGTGACCTCCTCAATCGATTGTCTTTCCAGGCACAACAGGACATCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAGAAGCTCAGCACATTGGCCTCCACATTGATGACGGATCTTCAGGACCGAATCCTCTAA 1212 0.4554 MASDAHTDKNIVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSPEQLKMMSFGGNNRAQVFFKQHGWTDGGKIEAKFTSRAADLYRQILSKEVAKSMAEDGGLPSSPVASQSSQGVNGLPEVRTNEVPKENTREKPEKPESTSSPRASHSVISSTVKKPIGAKKVGKSGGLGARKLTKKSSESLYEQKPEEAPAPVPSSTNNMPAGPSPTSRFEYVENVQSSELNTGGSNVMSHVSPPKSSSFFADFGMDGGFPKKSGPSSSKVQIQESDEARRKFSNAKSISSSQFFGDHTKATDLDSQASLSKFSGSSAISSADLFGDSRDNAIDLTASDLLNRLSFQAQQDISSLKNIAGETGKKLSTLASTLMTDLQDRIL 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00152 403 MobiDBLite consensus disorder prediction 126 241 - -
Phco8g00152 403 Gene3D Arf GTPase activating protein 1 136 IPR038508 -
Phco8g00152 403 MobiDBLite consensus disorder prediction 282 303 - -
Phco8g00152 403 MobiDBLite consensus disorder prediction 222 241 - -
Phco8g00152 403 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Phco8g00152 403 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Phco8g00152 403 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Phco8g00152 403 MobiDBLite consensus disorder prediction 154 170 - -
Phco8g00152 403 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 128 IPR001164 GO:0005096
Phco8g00152 403 FunFam ADP-ribosylation factor GTPase-activating protein AGD10 1 137 - -
Phco8g00152 403 CDD ArfGap_ArfGap2_3_like 8 123 - -
Phco8g00152 403 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 5 403 - -
Phco8g00152 403 SMART arf_gap_3 10 126 IPR001164 GO:0005096
Phco8g00152 403 Pfam Putative GTPase activating protein for Arf 12 97 IPR001164 GO:0005096
Phco8g00152 403 MobiDBLite consensus disorder prediction 133 148 - -
Phco8g00152 403 SUPERFAMILY ArfGap/RecO-like zinc finger 12 125 IPR037278 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00152 Phco-Chr8 1344376 1348879 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00152 8 1344376 1348879 Phco8g00152 8 1344376 1348879 ECH
Phco4g00497 4 3543607 3547288 Phco8g00152 8 1344376 1348879 PCT