Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00115 ATGGCCTTCTCTGCTGCTGCTGCTACCTTTCTCAAGCCAAACTATTCTTTCTCCCCATCCCACAAACCCAAACCTCCAACTCCATACTATCATTGCAGAAACAAGTTCTGCGTGAGAGTTTCAGCAAGTGACTCGGGTGACGTCGAGAAGACTATCATCAGGAAAGAGAAAGACGGGTGGAAGATCAATTACTCAGGAGAGAAACCACAGACACCATTGTTGGACACCGTCAACCACCCAATTCACATGAAGAATCTTTCCACACAGGATCTTGAGCAACTTGCAGCAGAGCTGAGGGCAGATATTGTACACAGTGTTTCAAACACTGGTGGGCATCTTAGCTCAAGCTTGGGAGTGGTGGAGTTATCAGTGGCTTTGCATCATGTTTTCAACACCCCTGAAGACAAAATTATATGGGATGTTGGTCATCAGGCATACCCACACAAGATTCTCACAGGTAGAAGATCCAGAATGCACACCATTAGGAAGACTTCGGGGCTAGCAGGTTTTCCTAAAAGGGATGAGAGTATTCATGATGCTTTTGGGGTTGGACACAGTTCTACAAGCATATCTGCTGGTCTTGGCATGGCTGTTGCACGTGATCTACTGGGGAAGAATAACAGCATCATATCAGTGATAGGAGATGGGGCATTAACAGCAGGCCAAGCTTATGAGGCCATGAACAATGCAGGGTTCCTTGATTCTAACATGATAGTAATACTCAATGACAACAAGCAAGTCTCTTTACCAACTGCCACACTTGATGGCCCTGCAAGTCCTGTTGGAGCCCTCAGCAGTACTTTGAGCAAAATTCAAGCGAGTACAGAATTCCGCAAACTTAGAGAAGCTGCAAAAAGCATCACGAAACAAATAGGAGGACAAACACACCAGGTTGCAGCCAAAGTGGATGAGTATGCAAGAGGCATGATCAGCGGTTCTGGATCTACATTATTTGAAGAACTTGGCTTGTACTACATAGGCCCTGTGGATGGTCATAACATTGAAGATCTAGTCACCATCTTTGAAAAAGTCAAAGCAATGCCTGCTCCAGGTCCGGTTTTGATTCATATTGTGACAGAAAAAGGAAAGGGATACCCCCCAGCAGAAAAAGCAGCTGATAGAATGCACGGGGTTGTAAAGTTTGATCCAAAAACAGGCCAGCAATTCAAGACAAAATCCCCAACACTTTCATACACACAGTACTTTGCCGAGTCTTTGATAAAGGAAGCTGAAATAGACAACAAGATAGTGGGCATTCACGCAGCAATGGGTGGTGGTACCGGCTTAAATTATTTCCACAAAAGGTTTCCCGATCGCTGTTTCGATGTGGGGATAGCCGAACAACATGCTGTTACATTTGCTGCTGGTTTAGCTGCTGAAGGCCTCAAGCCCTTTTGTGCCATTTATTCATCATTCCTGCAACGTGGATATGATCAGGTAGTCCATGATGTTGATCTTCAAAAGCTACCTGTCCGATTTGCTCTGGATAGAGCTGGTTTGGTTGGAGCAGATGGACCAACCCACTGTGGAGCATTTGATATCACTTACATGGCTTGCCTCCCCAACATGGTGGTCATGGCTCCTTCTGATGAAGCTGAACTGATGCACATGGTTGCAACAGCAGCAACTATAGATGACAGACCAAGCTGCTTCAGATTTCCAAGGGGAAATGGAATTGGAGCCACTTTGCCTCTGAATAACAAAGGAACCCCACTTGAGATAGGAAAAGGCAGAATTCTGATGGAAGGCAGCAGAGTTGCTATTTTGGGATATGGTTCTGTAGTCCAACAATGCAGGCATGCCTCAGAATTGCTTAAAGAAGTAGGCGTTAATGTGACTGTTGCTGATGCTAGGTTTTGCAAGCCATTGGATACTGATCTCATCAAGCTACTCGCTAAAGAGCACGAAATACTAATCACAGTGGAAGAGGGCTCTATTGGTGGTTTTGGATCACATGTTTCTCAATTCTTGAGCTTATCTGGTATCCTAGATGGACCTCTAAAGTGGAGAGCAATGATGCTTCCTGATAGGTACATTGATCATGGATCACCTCAGGATCAGGTTGAAGAAGCAGGGCTTTCATCAAAACACGTTGCGGCCACAGTTCTGTCTCTTCTTGAAAGGCCAAAAGAAGCTCTTCTGTTCAAATAG 2151 0.451 MAFSAAAATFLKPNYSFSPSHKPKPPTPYYHCRNKFCVRVSASDSGDVEKTIIRKEKDGWKINYSGEKPQTPLLDTVNHPIHMKNLSTQDLEQLAAELRADIVHSVSNTGGHLSSSLGVVELSVALHHVFNTPEDKIIWDVGHQAYPHKILTGRRSRMHTIRKTSGLAGFPKRDESIHDAFGVGHSSTSISAGLGMAVARDLLGKNNSIISVIGDGALTAGQAYEAMNNAGFLDSNMIVILNDNKQVSLPTATLDGPASPVGALSSTLSKIQASTEFRKLREAAKSITKQIGGQTHQVAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNIEDLVTIFEKVKAMPAPGPVLIHIVTEKGKGYPPAEKAADRMHGVVKFDPKTGQQFKTKSPTLSYTQYFAESLIKEAEIDNKIVGIHAAMGGGTGLNYFHKRFPDRCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFALDRAGLVGADGPTHCGAFDITYMACLPNMVVMAPSDEAELMHMVATAATIDDRPSCFRFPRGNGIGATLPLNNKGTPLEIGKGRILMEGSRVAILGYGSVVQQCRHASELLKEVGVNVTVADARFCKPLDTDLIKLLAKEHEILITVEEGSIGGFGSHVSQFLSLSGILDGPLKWRAMMLPDRYIDHGSPQDQVEEAGLSSKHVAATVLSLLERPKEALLFK 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00115 716 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 395 563 - -
Phco8g00115 716 NCBIfam 1-deoxy-D-xylulose-5-phosphate synthase 76 706 IPR005477 GO:0008661|GO:0016114
Phco8g00115 716 Gene3D - 66 368 - -
Phco8g00115 716 SMART Transket_pyr_3 396 561 IPR005475 -
Phco8g00115 716 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 374 557 IPR029061 -
Phco8g00115 716 ProSitePatterns Transketolase signature 1. 99 118 IPR005474 -
Phco8g00115 716 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 71 427 IPR029061 -
Phco8g00115 716 ProSitePatterns Transketolase signature 2. 502 518 IPR020826 -
Phco8g00115 716 Pfam Transketolase, pyrimidine binding domain 396 557 IPR005475 -
Phco8g00115 716 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 73 707 IPR005477 GO:0008661|GO:0016114
Phco8g00115 716 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 35 713 IPR005477 GO:0008661|GO:0016114
Phco8g00115 716 Pfam Transketolase, C-terminal domain 575 698 IPR033248 -
Phco8g00115 716 SUPERFAMILY TK C-terminal domain-like 570 706 IPR009014 GO:0003824
Phco8g00115 716 Gene3D - 575 707 IPR009014 GO:0003824
Phco8g00115 716 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 575 707 - -
Phco8g00115 716 CDD TPP_PYR_DXS_TK_like 402 555 - -
Phco8g00115 716 CDD TPP_DXS 110 365 IPR005477 GO:0008661|GO:0016114
Phco8g00115 716 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 74 359 IPR005477 GO:0008661|GO:0016114
Phco8g00115 716 Gene3D - 396 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00115 Phco-Chr8 1032882 1036156 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00115 8 1032882 1036156 Phco8g00115 8 1032882 1036156 ECH