Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00049 ATGGCACAGTTGCAACCTGAAAAGAAGATCCATGACAACTCAGAAAAAGACACCCAAGAAACTGGCAACTCCAGCTTCAAATTCAATGCCCAAGCGCCGGAATTTGTCCCAAGATCGCAATCCCAGATGCCCATTTCCGGTTATTTCTATCCATGTTTCCAGATTCTCGGTGGCTGTGGTGATTCTGATTGGTTCTTTGTTGGGGACCAGGATCCTTCTTGTTTGATCCCCACCGCCAGTGTTGCACTACCCAATTCCTCTAAGAATATCCTTACCCCTGATCTTCAGCAAAAGATCGTCAAACAGGTGGAATATCAGTTCAGTGACATGAGTTTGCTAGCAAATGAATCTTTCCAGAAGCAGATGAATAAAGATCCCGAAGGATATGTTCCAATAACCGTGATTGCTTCTACTAAAAAGGTTAAATCCCTCGTTAATAACGTTCATATGCTTACCCAAGCTATCCGTTCATCTTCAAAACTCGTTTTGAGCACTGATGGCAAGAAGGTTAAACGCAAACACCCTTTCACTGAGAAGGAAAAAGAGGACTTGCAGTCTCGCACTGTTGTTGCAGAAAATTTACCTGACGATCATTCCCATCAGAATCTTCAGAAAATATTTAGTACAGTTGGGAGCGTGAAAACGATTAGAATATGCCATCCTCAGGAGCCTAATACTTCTCGCCCAAAGTCTGATTTTTTTGTTAGTAATAAGCTCCATGCACTTGTGGAGTATGAGACATCAGATATTGCTGACAAAGCTGTTGAGAAGTTAAATGATGAAAGGAATTGGAGGAAAGGGATGCGAGTAAGGCTGCTCCTAAGATGCTCGCCCAAATCTGTTCTGAAGTGTAGAAAGTCTGAATTTGATGGATATCTAGAAGATGATGAGGTTCTAAATTCTGAAAATGCTGAGGATTCTTCTCACTCAAACAATGCTGAATTGTTTGATACAAATGTTGATGAAAACACAGTAGGATCCAAGAAAGGATGGGCTAGAGGACGTGGAAAGGGGAGAGGACGCACTCAAGGACGTGGGCTGCTTGCTCCACCATCTCAATCAAGCAGCACTGTTCTGTGTGATGTTCATACTAAACCGAATGCCAAGGGCCCAAGAATGCCAGATGGGACAAGAGGCTTTACCATGGGACGTGGAAAGCCAATTAGTCCCCCTGCTCTAGTCGCCTCATCTCAAGACTGA 1200 0.435 MAQLQPEKKIHDNSEKDTQETGNSSFKFNAQAPEFVPRSQSQMPISGYFYPCFQILGGCGDSDWFFVGDQDPSCLIPTASVALPNSSKNILTPDLQQKIVKQVEYQFSDMSLLANESFQKQMNKDPEGYVPITVIASTKKVKSLVNNVHMLTQAIRSSSKLVLSTDGKKVKRKHPFTEKEKEDLQSRTVVAENLPDDHSHQNLQKIFSTVGSVKTIRICHPQEPNTSRPKSDFFVSNKLHALVEYETSDIADKAVEKLNDERNWRKGMRVRLLLRCSPKSVLKCRKSEFDGYLEDDEVLNSENAEDSSHSNNAELFDTNVDENTVGSKKGWARGRGKGRGRTQGRGLLAPPSQSSSTVLCDVHTKPNAKGPRMPDGTRGFTMGRGKPISPPALVASSQD 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00049 399 ProSiteProfiles La-type HTH domain profile. 89 180 IPR006630 -
Phco8g00049 399 SUPERFAMILY "Winged helix" DNA-binding domain 91 176 IPR036390 -
Phco8g00049 399 SUPERFAMILY RNA-binding domain, RBD 171 273 IPR035979 GO:0003676
Phco8g00049 399 Pfam La domain 99 156 IPR006630 -
Phco8g00049 399 MobiDBLite consensus disorder prediction 1 29 - -
Phco8g00049 399 CDD RRM_La_like_plant 187 274 IPR034878 GO:0003723
Phco8g00049 399 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 187 272 IPR000504 GO:0003723
Phco8g00049 399 SMART rrm1_1 188 273 IPR000504 GO:0003723
Phco8g00049 399 MobiDBLite consensus disorder prediction 301 399 - -
Phco8g00049 399 MobiDBLite consensus disorder prediction 304 325 - -
Phco8g00049 399 Pfam Ataxin-2 C-terminal region 24 40 IPR009818 -
Phco8g00049 399 PRINTS Lupus La protein signature 181 197 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Phco8g00049 399 PRINTS Lupus La protein signature 102 119 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Phco8g00049 399 PRINTS Lupus La protein signature 128 143 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Phco8g00049 399 PRINTS Lupus La protein signature 159 172 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Phco8g00049 399 Gene3D - 179 279 IPR012677 -
Phco8g00049 399 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 192 260 IPR000504 GO:0003723
Phco8g00049 399 Gene3D - 92 178 IPR036388 -
Phco8g00049 399 MobiDBLite consensus disorder prediction 347 362 - -
Phco8g00049 399 PANTHER LUPUS LA PROTEIN-RELATED 31 366 IPR045180 -
Phco8g00049 399 SMART la 93 173 IPR006630 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00049 Phco-Chr8 442121 444425 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00049 8 442121 444425 Phco8g00049 8 442121 444425 ECH