Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00034 ATGGCTCAACCCACCACCAACGGCGATCTCAGTCAGCAGCAGGGGCAGCAGCAGCAGCAGCAGCAGTGGCCGCAGCAGCCGCATCAGTACCAGCACCAATGGATGGCTATGCAGTACCCGGCAACCGCCATGGCCATGATGCAGCAGCAGATGATGATGTACCCGCAGCATTACATGCCCTATGTTCACCCTCATTACCCCCCGCCGCCGCCCCCTCCCTCCCACCACCACCACCACAAACAGCCCGCCGCTTCCCCCGTCGCCTCCTCCGACGAGATCAGGACCATCTGGCTTGGCGACCTCCACCATTGGATGGACGAGAACTACCTCCACAACTGCTTTGCTCACACCGGCGAGGTTCTGTCGGCCAAGGTCATTCGGAATAAGCAAACTGGTCAGTCTGAGGGATATGGATTTGTAGAGTTCTATTCACGTCCGACGGCTGAGAAAGTTTTGCAGAACTATAATGGCACCATGATGCCAAACACAGATCAGGCATTTCGTCTGAATTGGGCCACATTCAGTGCTGGGGATAGGCGATCTTCTGATGCTACTTCTGATCTCTCAATATTTGTGGGGGACTTGGCCATTGATGTTACTGATGCTATGCTGCAAGAGACTTTTGCGAACAGATTTTCGTCTATCAAGGGAGCAAAAGTTGTCATTGATTCTAATACTGGTCGTTCAAAAGGTTATGGTTTTGTTAGGTTTGGCGATGAAAATGAGAGAACGAGGGCAATGACTGAAATGAATGGCGTTTATTGTTCTAGTAGGCCTATGAGAATAGGTGTTGCAACTCCGAAGAAAACTTATGGCTATCAACAACAATATTCTTCTCAAGCTGTCGTATTGGCTGGTGGACACTCGGCTAATGGTGCTGTGGCCCAAGGTTCCCAATCTGAGGGAGATTCAAACAACACTACTATATTTGTTGGAGGGCTTGATTCTGACATCAGTGATGAGGATCTCAGACAACCATTTTTGCAATTTGGTGAGGTTGTCTCTGTGAAAATTCCAGTGGGGAAAGGGTGTGGATTTGTTCAATTTGCTGACAGAAAGAATGCTGAGGATGCAATTCAGGCATTGAATGGGACAGTAATTGGGAAGCAGACAGTGCGCCTTTCTTGGGGTCGCAGTCCAGGAAATAAGCATTGGAGAAGTGATTCCAATGGAGGCCACTATGGTGGTCAGGGTTATGGAGGCCATGGATTTTCTGTGAGACAGAATCAGGATCTAGCCATGCAACCTGCTGCTGCTGCAATTCAAGGGGCTTCCTGA 1278 0.4977 MAQPTTNGDLSQQQGQQQQQQQWPQQPHQYQHQWMAMQYPATAMAMMQQQMMMYPQHYMPYVHPHYPPPPPPPSHHHHHKQPAASPVASSDEIRTIWLGDLHHWMDENYLHNCFAHTGEVLSAKVIRNKQTGQSEGYGFVEFYSRPTAEKVLQNYNGTMMPNTDQAFRLNWATFSAGDRRSSDATSDLSIFVGDLAIDVTDAMLQETFANRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVYCSSRPMRIGVATPKKTYGYQQQYSSQAVVLAGGHSANGAVAQGSQSEGDSNNTTIFVGGLDSDISDEDLRQPFLQFGEVVSVKIPVGKGCGFVQFADRKNAEDAIQALNGTVIGKQTVRLSWGRSPGNKHWRSDSNGGHYGGQGYGGHGFSVRQNQDLAMQPAAAAIQGAS 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00034 425 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 82 383 - -
Phco8g00034 425 CDD RRM2_SECp43_like 187 266 - -
Phco8g00034 425 Gene3D - 93 173 IPR012677 -
Phco8g00034 425 SUPERFAMILY RNA-binding domain, RBD 186 282 IPR035979 GO:0003676
Phco8g00034 425 Gene3D - 287 411 IPR012677 -
Phco8g00034 425 FunFam Polyadenylate-binding protein RBP47B 93 173 - -
Phco8g00034 425 FunFam Polyadenylate-binding protein RBP47 289 405 - -
Phco8g00034 425 MobiDBLite consensus disorder prediction 1 26 - -
Phco8g00034 425 SUPERFAMILY RNA-binding domain, RBD 297 405 IPR035979 GO:0003676
Phco8g00034 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 188 267 IPR000504 GO:0003723
Phco8g00034 425 MobiDBLite consensus disorder prediction 378 400 - -
Phco8g00034 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 94 174 IPR000504 GO:0003723
Phco8g00034 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 307 379 IPR000504 GO:0003723
Phco8g00034 425 SUPERFAMILY RNA-binding domain, RBD 61 175 IPR035979 GO:0003676
Phco8g00034 425 Gene3D - 175 281 IPR012677 -
Phco8g00034 425 MobiDBLite consensus disorder prediction 65 89 - -
Phco8g00034 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 309 372 IPR000504 GO:0003723
Phco8g00034 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 190 259 IPR000504 GO:0003723
Phco8g00034 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 163 IPR000504 GO:0003723
Phco8g00034 425 FunFam Polyadenylate-binding protein RBP47B 175 278 - -
Phco8g00034 425 CDD RRM1_SECp43_like 95 175 - -
Phco8g00034 425 SMART rrm1_1 95 170 IPR000504 GO:0003723
Phco8g00034 425 SMART rrm1_1 189 263 IPR000504 GO:0003723
Phco8g00034 425 SMART rrm1_1 308 375 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00034 Phco-Chr8 335123 339542 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00034 8 335123 339542 Phco8g00034 8 335123 339542 ECH