Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00024 ATGAAAATATATTGTAAAAAATTTGTATGTATCGTTTGTATCACCCATCTCATCATTTCGGTGACAACCGAACGCAGCTGCAGAAGAGTAACCATAGCAATGGAGATCAAACCTGGTTTGTCAGCACTAGTCACTGGTGGTGCCTCTGGAATCGGCAAGGATCTTGCCTTAGCTCTTGCAGAGAAGGGTGTATTTATCACTATTGTGGATATCTCTGAAGCAAATGGAAGAGAAGTTGCAAGCCTCGTTGAGAAAATTAACACCAAGTTTCATTCGAAATTGGAATTTCCCTCTGCAATGTTTGTGAAATGTGATGTGGCTAATGCAAGGGATTTAGCTGCTGCATTTCAAAAGCACTTTCTGACATATCGAGGTCTAGACATTTGTATTAACAGTGCGGGGATTAGTAGTTCTATACCATTCCGCAATGATCAAACAGATGGCACTCGAACATGGAGGCACACAGTTAATGTGAATTTCACTGCTGTTATTGATTCCACTCGCCTTGCGATTAAAGCCATGCAAGCTGCCAAAAGGCATGGTGTGATTATCAACTTGGGTTCTGCTTCCGGTCTTTATCCAATGTTCATGGACCCAATCTATGGTGGCTCTAAAGGTGGCGTTGTAATGTTTTCTAGAGCACTTCGTCCATACAAACGTCAGGGAATTCGAATCAATGTGCTTTGCCCTGAGTTTGTTGAAACTGAGATGGGATTAAAGATAGATCCCAATACGATAAACTTGATGGGGGGCTTTGTACCTATGGAAATGGTGGTGAAAGGTGCTTTTGAGCTCATTACGGATGAAAGTAAAGCTGGTCATTGCCTATGGATTACAAATCGTCGGGGTTTTGAGTACTGGCCCACAGCATCTGAAGAAGCAAAGTACCTAATAGGTTCCTCTCGTTTTAAGAGAAGAGGATCTGATTTCAGAGCTCCATCAATTAAACTTCCTGAGAGTTTTGAGAAAATAGTTGTCCACACCTTGACTCATAACTTTAGGAATGCAACAAGCATAGTGAGAACACCACTGAAATTACCTATCAAGCCGAAGCATGTTCTTGTTAAGATAATTTATGCTGGTGTGAATGCTAGTGATGTAAATTTTAGCTCAGGCCGCTATTTTGGCGGAAACAACAATGATACTGCTTCTCGTCTTCCATTTGATGCAGGATTTGAGGCTGTAGGAATAATTGCAGCAGTTGGGGATTCTGTCACTGACTTGAAAATTGGTATGCCTTGTGCATTCATGACTTTTGGAGGCTATGCTGAATTCATAATGATTTCTTCAAAACATGCCCTTCCGGTTCCTAGACCAGATCCTGAAGTTGTGGCCATGCTTACATCAGGATTAACAGCCTCAATTGCACTAGAAAAGGCAGGACAGATGGAATCTGGAAAAGTGGTCCTTGTAACTGCTGCGGCTGGAGGAACTGGGCAATTTGCTGTTCAGGTAGCAAAATTAGCAGGAAATAGGGTGGTTGCAACTTGTGGAGGTGGGGCAAAGGCCAAGCTTCTGAAGGAGTTGGGAGTTGACAGAGTCATAGACTATCATAATGAAGATATAAAATCTGTTCTGAGGGAAGAGTTCCCAAAAGGTATTGACATCATCTATGAGTCTGTTGGCGGTGACATGTTAAACTTGTGCTTGAATGCTTTGGCAGTTCATGGACGACTCATTATTATTGGCATGATTTCTCAGTATCAAGGAGAAAAGGGTTGGACGCCTTCAAAATACCCTGGCCTATGTGAGAAGCTCTTAGCAAAGAGCCAAACTGTGGCTGGCTTTTTCTTGGTGCAATATGGTCACTTGTGGCAAGAGCATCTTAACAAGCTATTTGATCTTCACTCTACGGGAAAGCTAAAGGTTGCTATTGATCCAAAGAGATTTATAGGCCTGCATTCTGTTGCTGACGCTGTTGAGTATCTCCATTCGGGCAAAAGTGTTGGGAAGGTTGTCGTCTCCGTGGACCCAAACTTCCTTCCTCTAGAGGCCAAATTGTGA 2004 0.4266 MKIYCKKFVCIVCITHLIISVTTERSCRRVTIAMEIKPGLSALVTGGASGIGKDLALALAEKGVFITIVDISEANGREVASLVEKINTKFHSKLEFPSAMFVKCDVANARDLAAAFQKHFLTYRGLDICINSAGISSSIPFRNDQTDGTRTWRHTVNVNFTAVIDSTRLAIKAMQAAKRHGVIINLGSASGLYPMFMDPIYGGSKGGVVMFSRALRPYKRQGIRINVLCPEFVETEMGLKIDPNTINLMGGFVPMEMVVKGAFELITDESKAGHCLWITNRRGFEYWPTASEEAKYLIGSSRFKRRGSDFRAPSIKLPESFEKIVVHTLTHNFRNATSIVRTPLKLPIKPKHVLVKIIYAGVNASDVNFSSGRYFGGNNNDTASRLPFDAGFEAVGIIAAVGDSVTDLKIGMPCAFMTFGGYAEFIMISSKHALPVPRPDPEVVAMLTSGLTASIALEKAGQMESGKVVLVTAAAGGTGQFAVQVAKLAGNRVVATCGGGAKAKLLKELGVDRVIDYHNEDIKSVLREEFPKGIDIIYESVGGDMLNLCLNALAVHGRLIIIGMISQYQGEKGWTPSKYPGLCEKLLAKSQTVAGFFLVQYGHLWQEHLNKLFDLHSTGKLKVAIDPKRFIGLHSVADAVEYLHSGKSVGKVVVSVDPNFLPLEAKL 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00024 667 SUPERFAMILY GroES-like 331 470 IPR011032 -
Phco8g00024 667 Pfam Alcohol dehydrogenase GroES-like domain 351 415 IPR013154 -
Phco8g00024 667 Gene3D - 326 654 - -
Phco8g00024 667 Gene3D - 39 298 - -
Phco8g00024 667 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 466 487 IPR002364 GO:0008270|GO:0016491
Phco8g00024 667 SMART PKS_ER_names_mod 328 654 IPR020843 GO:0016491
Phco8g00024 667 Gene3D - 445 623 - -
Phco8g00024 667 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 124 135 IPR002347 -
Phco8g00024 667 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 201 220 IPR002347 -
Phco8g00024 667 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 181 189 IPR002347 -
Phco8g00024 667 CDD Mgc45594_like 320 644 - -
Phco8g00024 667 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 442 620 IPR036291 -
Phco8g00024 667 PRINTS Glucose/ribitol dehydrogenase family signature 175 191 IPR002347 -
Phco8g00024 667 PRINTS Glucose/ribitol dehydrogenase family signature 201 220 IPR002347 -
Phco8g00024 667 PRINTS Glucose/ribitol dehydrogenase family signature 124 135 IPR002347 -
Phco8g00024 667 PRINTS Glucose/ribitol dehydrogenase family signature 41 58 IPR002347 -
Phco8g00024 667 PRINTS Glucose/ribitol dehydrogenase family signature 221 238 IPR002347 -
Phco8g00024 667 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 188 216 IPR020904 GO:0016491
Phco8g00024 667 PANTHER SHORT-CHAIN DEHYDROGENASE/REDUCTASE 318 655 - -
Phco8g00024 667 Pfam Zinc-binding dehydrogenase 477 611 IPR013149 -
Phco8g00024 667 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 41 286 IPR036291 -
Phco8g00024 667 FunFam Prostaglandin reductase 2 445 623 - -
Phco8g00024 667 Pfam short chain dehydrogenase 42 241 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00024 Phco-Chr8 268303 279692 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00024 8 268303 279692 Phco8g00024 8 268303 279692 ECH