Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02923 ATGAGTCAGGAATCGTTTATATATAGCTTCGTGGCTCGTGGGACGATGGTCTTAGCTGAGTACACGGAGTTCACCGGAAACTTCCCTGCCATTGCAGCTCAGTGTCTTCACAAGCTTCCCTCTTCCAACAACAAGTTCACTTACAACTGTGACCACCACACCTTCAATTTCCTGGTTGAGGATGGTTATGCATACTGTGTTGTTGCTAAAGAATCTGTTGGCAAGCAGATCTCCATTGCTTTCCTTGAACGGGTCAAAGCAGACTTTAAAAAAAGATACGGTGGTGGAAAAGCAGATACAGCTATTGCTAAGAGTCTGAACAAGGAGTTTGGACCAGTTATGAAAGGGCACATGAAGTATATCATCGATCACGCTGAAGAGATTGAAAAGCTAATAAAAGTGAAGGCTCAAGTTTCAGAAGTTAAGAGTATTATGTTAGAAAACATAGACAAGGCCATTGATAGAGGAGAAAATCTAACTATTCTTGCAGATAAGACAGAGACATTGCGTTCACAGGCTCAGGATTTCAGAAAGCAAGGAGCACAAGTCCATCGGAAGATGTGGTATCAGAACATGAAAATTAAACTAGTTGTTCTGGGAATTTTGTTGTTTTTGGTCTTGGTTATCTGGCTTTCTATTTGTGGTGGATTTGACTGTACAAACTAG 666 0.4114 MSQESFIYSFVARGTMVLAEYTEFTGNFPAIAAQCLHKLPSSNNKFTYNCDHHTFNFLVEDGYAYCVVAKESVGKQISIAFLERVKADFKKRYGGGKADTAIAKSLNKEFGPVMKGHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKAIDRGENLTILADKTETLRSQAQDFRKQGAQVHRKMWYQNMKIKLVVLGILLFLVLVIWLSICGGFDCTN 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02923 221 CDD R-SNARE 129 188 - -
Phco7g02923 221 ProSitePatterns Synaptobrevin signature. 148 167 IPR001388 GO:0016020|GO:0016192
Phco7g02923 221 Gene3D Longin domain 1 126 - -
Phco7g02923 221 SMART Longin_2 31 113 IPR010908 -
Phco7g02923 221 PANTHER SNARE PROTEINS 3 215 - -
Phco7g02923 221 Pfam Synaptobrevin 129 215 IPR042855 -
Phco7g02923 221 PRINTS Synaptobrevin signature 191 210 IPR001388 GO:0016020|GO:0016192
Phco7g02923 221 PRINTS Synaptobrevin signature 155 174 IPR001388 GO:0016020|GO:0016192
Phco7g02923 221 PRINTS Synaptobrevin signature 135 154 IPR001388 GO:0016020|GO:0016192
Phco7g02923 221 ProSiteProfiles Longin domain profile. 10 114 IPR010908 -
Phco7g02923 221 FunFam Vesicle-associated membrane protein 726 128 214 - -
Phco7g02923 221 Pfam Regulated-SNARE-like domain 32 110 IPR010908 -
Phco7g02923 221 Gene3D - 127 214 - -
Phco7g02923 221 CDD Longin 7 120 IPR010908 -
Phco7g02923 221 ProSiteProfiles v-SNARE coiled-coil homology domain profile. 130 190 IPR042855 -
Phco7g02923 221 SUPERFAMILY SNARE fusion complex 126 192 - -
Phco7g02923 221 SUPERFAMILY SNARE-like 6 120 IPR011012 -
Phco7g02923 221 FunFam Vesicle-associated membrane protein 724 1 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02923 Phco-Chr7 48161977 48164281 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g02923 7 48161977 48164281 Phco7g02923 7 48161977 48164281 ECH