Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02859 ATGAACTTTGGAATGATAATTATTGTTGGAGAAAAGGGCTCGCAGCACACTGAACTAATCTCTCAAAATTCGTTGCCCCCTTCCACTCTCTTCAACCAAAACCGAATCGTAGCGCGGCGGCGGGCGATGGCAACGACGTCGGTGGTGCCGGCGAACCGGCGGAGGGCGGTGAATGCGGCGGATGATATGGACTTCGAGACGACGGAGGGTGTGAAGGCGATCGCGAGCTTCGAGGAGATGGGGATAAAGGACGATCTGCTCCGTGGAATCTACCAGTACGGCTTCGAGAAGCCCTCTGCCATACAGCAACGGGCCGTCACGCCAATCATCCAGGGCCGTGACGTCATCGCCCAGGCCCAATCCGGAACTGGCAAAACCTCCATGATTGCTCTCACCGTTTGCCAAGTCGTCGATACCTCCGTCAGAGAAGTTCAGGCCTTGATATTATCACCAACAAGGGAACTGGCCTCACAGACTGAGAAGGTTATATTGGCTATTGGAGATTTCATTAACATACAAGCACATGCTTGCATTGGAGGTAAAAGTGTGGGTGAAGATATTAGGAAACTTGAGTATGGAGTTCATGTGGTATCTGGAACTCCTGGCCGAGTCTGTGACATGATCAAAAGGAGAACATTGCGTACGAGGGCTATAAAGATGCTAATTCTGGACGAATCTGATGAGATGTTGAGCAGAGGATTTAAGGATCAAATTTATGACGTGTATAGATATCTCCCACCTGACCTTCAGGTTGTCTTGATTTCTGCTACCCTTCCTCATGAAATACTGGAAATGACAAATAAATTCATGACCGATCCTGTAAGGATCCTTGTAAAACGTGATGAATTGACATTGGAGGGCATCAAGCAATTTTTTGTTGCAGTCGAAAGGGAGGAATGGAAGTTTGATACCCTGTGTGATCTTTATGATACCCTCACAATCACTCAAGCTGTTATATTCTGTAACACTAAGCGGAAGGTGGACTGGTTAACTGAAAAAATGCGTAACAATAATTTCACAGTCTCATCAATGCATGGTGACATGCCTCAGAAAGAAAGAGATGCTATTATGGGAGAATTTCGTGCTGGAACAACTCGGGTACTAATAACAACTGATGTTTGGGCCCGTGGTCTTGATGTACAGCAGGTGTCTCTAGTTATCAATTATGACCTTCCAAACAATCGAGAGCTTTACATTCATCGAATTGGTCGCTCTGGACGTTTTGGACGAAAGGGTGTTGCGATAAATTTTGTGAAGAGTGATGACATCAAGATCTTGAGAGACATTGAGCAATACTACAGTACTCAGATTGATGAAATGCCAATGAATGTTGCTGATCTTATATAA 1347 0.4558 MNFGMIIIVGEKGSQHTELISQNSLPPSTLFNQNRIVARRRAMATTSVVPANRRRAVNAADDMDFETTEGVKAIASFEEMGIKDDLLRGIYQYGFEKPSAIQQRAVTPIIQGRDVIAQAQSGTGKTSMIALTVCQVVDTSVREVQALILSPTRELASQTEKVILAIGDFINIQAHACIGGKSVGEDIRKLEYGVHVVSGTPGRVCDMIKRRTLRTRAIKMLILDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRNNNFTVSSMHGDMPQKERDAIMGEFRAGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02859 448 CDD SF2_C_DEAD 288 418 - -
Phco7g02859 448 Gene3D - 280 448 IPR027417 -
Phco7g02859 448 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 106 276 IPR014001 -
Phco7g02859 448 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 75 103 IPR014014 GO:0003724
Phco7g02859 448 SMART helicmild6 328 409 IPR001650 -
Phco7g02859 448 Gene3D - 59 279 IPR027417 -
Phco7g02859 448 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 72 431 - -
Phco7g02859 448 Pfam Helicase conserved C-terminal domain 301 409 IPR001650 -
Phco7g02859 448 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 287 448 IPR001650 -
Phco7g02859 448 FunFam Eukaryotic initiation factor 4A-III 282 448 - -
Phco7g02859 448 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 143 431 IPR027417 -
Phco7g02859 448 FunFam Eukaryotic initiation factor 4A-III 58 279 - -
Phco7g02859 448 SMART ultradead3 94 291 IPR014001 -
Phco7g02859 448 Pfam DEAD/DEAH box helicase 100 262 IPR011545 GO:0003676|GO:0005524
Phco7g02859 448 CDD DEADc_EIF4AIII_DDX48 77 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02859 Phco-Chr7 47622334 47627851 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g02859 7 47622334 47627851 Phco7g02859 7 47622334 47627851 ECH