Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02787 ATGGCATTTGCATTTGAACAATTTCTTCTTTTGTTGATGATTTTTTCAACATGTTTCTCATCAACTAGCAGCATTTCATCTGTTAAACCTCAGAGACTGGTCTCCAGACTCATTCACCCGGGCTCAATTCACCATCCCCACTACAAGCCACATGAAACAGCCAAAGACCGAATGGAACTTGATATCCAACACTCAGCAGCACGTTTAGCCTACATACAAGCAAGGATAGAAGGTTCTTTGGTCTCTAATAATGACCACAAAGCTAGTGCTTCTCCCTCCTTAACAGGTAGAACCATACTGGCCAATATCTCAATAGGCCAACCCCCTATCCCACAACTAGTTGTTATAGACACTGCCAGTGACACCTTCTGGGTCATGTGCTCCCCTTGCACAAATTGTGACAACCATTTAGGTCCACTCTTTGACCCATTAAAGTCTTCCACCTTTTTCCCACAGTGCAAAATACCATGTGTCTTCAAGGGTTGCAAATGTGACCCTATTCCATTTAGTGCCTCTTATGCAGATAGCTCCACCGCTTCAGGAACATATGGTCGTGATACTATTGTCTTTGAGACAACTGATGAAGGTACCTCTCAGATACTTGATGTACTGTTTGGATGTGGCCACTACATTGGATACAATTCAGATCCAGGACACAATGGAATACTAGGACTAAACAGTGCAGCAGAATCTTTGGCAACAAAAATTGGCCAAAAGTTTTCTTACTGCATAGGCAACCTGGATGACCCTCATTACAATTACAACCAACTGATATTAGGTGAAGGGGCAGATCTTGAAGGTTTTTCCACCCCTTTTGAAGTCCACAATGGCTTTTATTATGTCACCATGGAAGGCATAAGTATAGGGGAGAAAAGGCTGGACATAGCTCCAGGAACTTTTGACATGAAAGAGAATGGCACAGGAGGAGTCATCATTGACACTGGCAGCACTATCAGCTACCTAGTTGATGATGTGCATAAACTAATATACAAAGAAGTTAGAAATCTCATCGGTTGGTCCTTTAGAGGAGCAACAATTGAAAATTCCCCATGGATGTTGTGCTATTATGGTAGTATCAGCAAAGATCTAACTGGGTTTCCAGTGGTTACATTCCATTTTGCTGATGGAGCAGATTTGGCTATGGATTCTGGAAGCTTTTTTAGTCAAGTCAGTAATGACATATTCTGCATGACTATAGGTCCAGCGAGTAACATCGACATTAAAAGTAAGCCTTCAGTTGTTGGATTGTTAGCCCAACAGAGTTACAACGTGGGATATGACCTTGTTAATAACTATGTTTACCTCCAAAGAATTGATTGTGAACTTCTTAGTGGTTGA 1338 0.4163 MAFAFEQFLLLLMIFSTCFSSTSSISSVKPQRLVSRLIHPGSIHHPHYKPHETAKDRMELDIQHSAARLAYIQARIEGSLVSNNDHKASASPSLTGRTILANISIGQPPIPQLVVIDTASDTFWVMCSPCTNCDNHLGPLFDPLKSSTFFPQCKIPCVFKGCKCDPIPFSASYADSSTASGTYGRDTIVFETTDEGTSQILDVLFGCGHYIGYNSDPGHNGILGLNSAAESLATKIGQKFSYCIGNLDDPHYNYNQLILGEGADLEGFSTPFEVHNGFYYVTMEGISIGEKRLDIAPGTFDMKENGTGGVIIDTGSTISYLVDDVHKLIYKEVRNLIGWSFRGATIENSPWMLCYYGSISKDLTGFPVVTFHFADGADLAMDSGSFFSQVSNDIFCMTIGPASNIDIKSKPSVVGLLAQQSYNVGYDLVNNYVYLQRIDCELLSG 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02787 445 CDD pepsin_A_like_plant 100 440 IPR034161 -
Phco7g02787 445 Gene3D Acid Proteases 88 259 IPR021109 -
Phco7g02787 445 Pfam Xylanase inhibitor N-terminal 101 260 IPR032861 -
Phco7g02787 445 ProSiteProfiles Peptidase family A1 domain profile. 99 436 IPR033121 -
Phco7g02787 445 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 310 321 IPR001969 GO:0004190|GO:0006508
Phco7g02787 445 PRINTS Pepsin (A1) aspartic protease family signature 105 125 IPR001461 GO:0004190|GO:0006508
Phco7g02787 445 PRINTS Pepsin (A1) aspartic protease family signature 240 253 IPR001461 GO:0004190|GO:0006508
Phco7g02787 445 PRINTS Pepsin (A1) aspartic protease family signature 310 321 IPR001461 GO:0004190|GO:0006508
Phco7g02787 445 SUPERFAMILY Acid proteases 100 440 IPR021109 -
Phco7g02787 445 PANTHER OS07G0603500 PROTEIN-RELATED 36 440 - -
Phco7g02787 445 FunFam Aspartyl protease family protein 263 442 - -
Phco7g02787 445 Gene3D Acid Proteases 266 443 IPR021109 -
Phco7g02787 445 Pfam Xylanase inhibitor C-terminal 279 433 IPR032799 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02787 Phco-Chr7 46935216 46936553 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g02787 7 46935216 46936553 Phco7g02787 7 46935216 46936553 ECH