Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02738 ATGGAGACTCCTCCGCAGCAAGGTGTGGTGAAGAAGAAGGAGACAAGGGGTCGTAAACCTAAGCCAAAGGACGATAAGAAAGAGGAACACTCCAAGACAAAGGAAGGGAGAAAAACACAGCAATATCAGCAGCAACAGCAGCAGCAGCAGCAGCAACCTTCGGTGGACGAGAAATACACGCAATGGAAGTCCCTTGTTCCTGTCCTCTACGACTGGCTCGCCAACCACAACCTTGTTTGGCCCTCTCTCTCTTGCCGGTGGGGCCCTCAGCTTGAACAAGCCACTTACAAGAATCGTCAGCGGCTATATCTTTCTGAACAGACTGATGGTAGCGTTCCGAATACTCTGGTGATTGCGAACTGCGAGGTTGTGAAGCCTAGGGTTGCGGCTGCAGAGCACATTTCACAGTTTAATGAAGAGGCACGCTCCCCATTTGTGAAGAAGTTCAAGACCATCATACATCCTGGCGAGGTGAACAGAATTAGGGAATTACCCCAAAATTCCAAGATAGTGGCGACGCATACAGATAGCCCTGATGTCCTTGTTTGGGATGTTGAAAATCAACCAAACCGTCATGCTGTCCTTGGAGCTACAAACTCTCGGCCTGATTTGATATTAACTGGACACCAAGATAATGCAGAATTTGCTCTTTCAATGTGCCCAACTGAGCCCTATGTTCTTTCAGGAGGAAAGGACAAAACGGTGGTATTGTGGAGTATTGAAGACCATATAACATCTGCTGCCACAGGTGGATCAATTATCAAGCCAAACTCTAAATCTGGAGAAGCCAATGATAAAAATGCTGATAGCCCTGCTGTAGGGCCACGAGGTGTCTACTGTGGGCATGAGGATACTGTTGAAGATGTGACTTTCTGTCCATCTAGTGCACAGGAGTTCTGTAGTGTTGGAGATGATTCTTGTCTCATCTTATGGGATGCACGTGTTGGCTCTAGCCCTGTGGTTAAGGTTGAAAAAGCTCATAATGCTGATCTTCACTGTGTTGATTGGAATCCACATGATGATAATCTGATTCTAACTGGGTCAGCAGATAATTCTGTTCGCATGTTTGATCGCCGCAATCTCACCACTAATGGAGTTGGGTCACCCATCCATAAATTTGAGGGTCACAAAGCGGCTGTTCTTTGTGTTCAGTGGTCTCCAGACAAATCATCAGTATTTGGAAGTTCAGCTGAGGATGGTCTCTTGAACATTTGGGACTATGAGAAGGTTGGTAAAAAGATAGAGCGGTCTGGAAAATCAATAAGTGCTCCTCCAGGGTTGTTTTTCCAACATGCAGGTCATAGAGATAAAGTAGTTGATTTTCATTGGAATGCATATGATCCATGGACAATTGTTAGCGTGTCTGATGACTGTGAAAGTACCGGTGGAGGGGGAACATTGCAGATATGGCGCATGAGTGATTTGATCTACAGACCAGAAGAGGAGGTTTTGGCAGAGCTGGAGAAATTCAAATCTCATGTGGTGGCTTGCGCTTCGAAATCTGAAAAATGA 1512 0.459 METPPQQGVVKKKETRGRKPKPKDDKKEEHSKTKEGRKTQQYQQQQQQQQQQPSVDEKYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLVWDVENQPNRHAVLGATNSRPDLILTGHQDNAEFALSMCPTEPYVLSGGKDKTVVLWSIEDHITSAATGGSIIKPNSKSGEANDKNADSPAVGPRGVYCGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGSSPVVKVEKAHNADLHCVDWNPHDDNLILTGSADNSVRMFDRRNLTTNGVGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSISAPPGLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDDCESTGGGGTLQIWRMSDLIYRPEEEVLAELEKFKSHVVACASKSEK 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02738 503 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 324 357 - -
Phco7g02738 503 MobiDBLite consensus disorder prediction 7 37 - -
Phco7g02738 503 ProSiteProfiles Trp-Asp (WD) repeats profile. 373 408 IPR001680 GO:0005515
Phco7g02738 503 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 373 408 - -
Phco7g02738 503 MobiDBLite consensus disorder prediction 250 271 - -
Phco7g02738 503 SUPERFAMILY WD40 repeat-like 144 497 IPR036322 GO:0005515
Phco7g02738 503 FunFam WD-40 repeat-containing protein MSI4 30 489 - -
Phco7g02738 503 Pfam WD domain, G-beta repeat 325 357 IPR001680 GO:0005515
Phco7g02738 503 Pfam WD domain, G-beta repeat 277 312 IPR001680 GO:0005515
Phco7g02738 503 Pfam WD domain, G-beta repeat 204 239 IPR001680 GO:0005515
Phco7g02738 503 Pfam WD domain, G-beta repeat 367 406 IPR001680 GO:0005515
Phco7g02738 503 PANTHER WD40 REPEAT FAMILY 47 486 - -
Phco7g02738 503 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 57 123 IPR022052 -
Phco7g02738 503 MobiDBLite consensus disorder prediction 1 56 - -
Phco7g02738 503 ProSiteProfiles Trp-Asp (WD) repeats profile. 324 357 IPR001680 GO:0005515
Phco7g02738 503 MobiDBLite consensus disorder prediction 250 265 - -
Phco7g02738 503 MobiDBLite consensus disorder prediction 38 56 - -
Phco7g02738 503 ProSiteProfiles Trp-Asp (WD) repeats profile. 279 321 IPR001680 GO:0005515
Phco7g02738 503 SMART WD40_4 199 239 IPR001680 GO:0005515
Phco7g02738 503 SMART WD40_4 272 312 IPR001680 GO:0005515
Phco7g02738 503 SMART WD40_4 317 357 IPR001680 GO:0005515
Phco7g02738 503 SMART WD40_4 145 184 IPR001680 GO:0005515
Phco7g02738 503 SMART WD40_4 424 471 IPR001680 GO:0005515
Phco7g02738 503 SMART WD40_4 366 406 IPR001680 GO:0005515
Phco7g02738 503 Gene3D - 31 489 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02738 Phco-Chr7 46390156 46396268 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g02738 7 46390156 46396268 Phco7g02738 7 46390156 46396268 ECH