Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02728 ATGGCGTGGCTGCTTCGCACCGCTAGCTCTTCTATTCTTAAACGTTCTTTGTTCCATTCCGACCTTCTGACGCGCTTTTGCTTCAAACCAGGACTATTGGGCACGTCTCAAGTTTTGAGCTTTTCAACTCGTAGAAGGAGGTCTAAATCAGATGGAAGTGACTCAGGTGAAGAGAACATGTCTAAGAAAGATGTGGCCCTACAACAAGCTATTGATCAGATCACTTCTGCATATGGAAAGGGATCTATCATGTGGCTTGGTCGTTCTGTGTCACCTAAAAATATTGCTGTGGTGTCTACCGGTTCTTTTGCTCTTGATATAGCACTTGGGGTTGGAGGTCTTCCAAAGGGGCGTGTTGTGGAAATATTTGGTCCAGAGGCTTCTGGGAAAACAACTCTTGCTTTGCATGTGATTGCAGAAGCACAGAAGCTTGGAGGCTACTGTGCCTTTGTTGATGCTGAGCATGCACTTGATAAGACACTTGCAGAGTCAATTGGAGTAAATACTAAGAACTTGCTTCTCTCACAACCCGATTGTGGTGAACAAGCACTTGGCCTTGTGGATACCTTAATTCGGAGTGGTTCAATTGATGTAATTGTTGTTGACAGTGTGGCTGCTCTGGTTCCTAAAGGCGAGCTTGATGGTGAGATGGGTGATGCTCACATGGCAATGCAGGCTAGGTTGATGAGTCAGGCTCTTCGGAAATTGTGCCACTCCTTATCTCTTTCCCAGTGTATATTGGTTTTTATAAACCAGGTGAGGTCAAAGATTTCTACTTTTGGGGGATTTGGTGGTCCCACTGAAGTTACCTGTGGTGGTAATGCACTGAAGTTCTATGCTTCTGTGCGGTTAAATATCAAAAGAATTGGGTTTGTCAAGAAGGGTGAAGAGACTTTGGGAAGCCAGGTTCTTGTCAAGGTTGTGAAGAACAAGCATGCCCCTCCATTTAAAACTGCACAGTTTGAGCTTGAGTTTGGCAAGGGTATAAGTAGAGAAGCAGAGGTTATAGAGTTGAGCATAAAATACAAACTCATCAGGAAGAGTGGTTCATTTTATGAATATAATGGCCAGAATTTCCATGGCAAGGATGCTCTAAAGAGGTTCCTGGTGGACAGTGATGGTCTACAAGAATTAGCAACAAAGCTCAGGGAGAAGATTCTTAATGTAGAGCCAGAACTGGACCCAGAGGAGCAGGCAATGATCGGAGACGTTATGGAAGAAATGGTATCTCTAGATTCTACTGATGAAACTGCTGCTGCTGCCGTAGAAGCATAA 1275 0.4431 MAWLLRTASSSILKRSLFHSDLLTRFCFKPGLLGTSQVLSFSTRRRRSKSDGSDSGEENMSKKDVALQQAIDQITSAYGKGSIMWLGRSVSPKNIAVVSTGSFALDIALGVGGLPKGRVVEIFGPEASGKTTLALHVIAEAQKLGGYCAFVDAEHALDKTLAESIGVNTKNLLLSQPDCGEQALGLVDTLIRSGSIDVIVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLCHSLSLSQCILVFINQVRSKISTFGGFGGPTEVTCGGNALKFYASVRLNIKRIGFVKKGEETLGSQVLVKVVKNKHAPPFKTAQFELEFGKGISREAEVIELSIKYKLIRKSGSFYEYNGQNFHGKDALKRFLVDSDGLQELATKLREKILNVEPELDPEEQAMIGDVMEEMVSLDSTDETAAAAVEA 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02728 424 ProSiteProfiles RecA family profile 1. 94 253 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Phco7g02728 424 FunFam Recombinase RecA 92 390 - -
Phco7g02728 424 SMART AAA_5 116 290 IPR003593 GO:0016887
Phco7g02728 424 CDD RecA 94 331 IPR013765 GO:0003697|GO:0005524|GO:0006281
Phco7g02728 424 ProSitePatterns recA signature. 275 283 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Phco7g02728 424 ProSiteProfiles RecA family profile 2. 263 334 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Phco7g02728 424 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 67 329 IPR027417 -
Phco7g02728 424 Pfam recA bacterial DNA recombination protein 66 330 IPR013765 GO:0003697|GO:0005524|GO:0006281
Phco7g02728 424 PANTHER RECA 44 396 IPR013765 GO:0003697|GO:0005524|GO:0006281
Phco7g02728 424 Gene3D - 93 387 IPR027417 -
Phco7g02728 424 PRINTS RecA protein signature 186 215 IPR013765 GO:0003697|GO:0005524|GO:0006281
Phco7g02728 424 PRINTS RecA protein signature 224 253 IPR013765 GO:0003697|GO:0005524|GO:0006281
Phco7g02728 424 PRINTS RecA protein signature 152 181 IPR013765 GO:0003697|GO:0005524|GO:0006281
Phco7g02728 424 PRINTS RecA protein signature 305 334 IPR013765 GO:0003697|GO:0005524|GO:0006281
Phco7g02728 424 PRINTS RecA protein signature 272 300 IPR013765 GO:0003697|GO:0005524|GO:0006281
Phco7g02728 424 Hamap Protein RecA [recA]. 63 390 IPR013765 GO:0003697|GO:0005524|GO:0006281
Phco7g02728 424 MobiDBLite consensus disorder prediction 44 61 - -
Phco7g02728 424 NCBIfam recombinase RecA 63 384 IPR013765 GO:0003697|GO:0005524|GO:0006281
Phco7g02728 424 SUPERFAMILY RecA protein, C-terminal domain 330 384 IPR023400 -
Phco7g02728 424 MobiDBLite consensus disorder prediction 44 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02728 Phco-Chr7 46238669 46244158 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g02728 7 46238669 46244158 Phco7g02728 7 46238669 46244158 ECH
Phco8g01896 8 20028657 20038886 Phco7g02728 7 46238669 46244158 PCT