Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02696 ATGTTAATCGGTGTGCATGAATTCTTGGTTCATGGAGTTAATAGGATTGATACGAGTTCTCTATTTACTCCTACAGAGGGGTTGAGTTTGCTACGGAAATCCAAAATTGGAGGGAGAATGTCGGTGAATCTAACAGAAAAAGCGATTCCGGCGATAATCGGCGGCGACGTGAACGCCAAACCGCTTGTTCAGGTTCTGGACGTAGCGTTAGTCTCCGATACCAACAACTCGCAGAAGCAGAGATACCGTCTTCTCCTTTCCGACGCCGTTTTGTCTCACCACGCGATGCTCGCCACTCAGCTCAACGATCGAGTCCGAAGCGGTCAAGTTCGGAAGGGTTCGGTTGTTCAGCTTCTCGATTATATATGCTCTCCTTTCAAGAACCGCAAGATTATCATGGTTCTAAACATGGAAACTATAATAGCTGATTTTGAGATCATTGGGAATCCGAAGCCATGCGTTGATTCAGATTTACCAAGTGTGAGAGCTTTAGCTGATAACACTGTGGCCAGGAGTAATAGTAATAGTGATAATATTATTAATTCTGCTGCTCGAAATGCAAGTCATGATAACGCCCAGAATTTCAGGCCAACTATTCAACCTCCATACCAACCGCCTCCAGTTTACAAAGGCCGTGGGGCAGTTATGAAAAATGAGGCGCCAGCACGCATCATTCCTATAGCCGCTTTAAATCCTTATCAAGGTCGGTGGGCTATCAGGGCAAGGGTAACTGCTAAAGGGGATCTGCGCCGCTACAATAATGCACGCGGTGATGGAAAAGTATTCTCATTTGATCTCCTCGATTCTGATGGAGGCGAAATACGAGTAACATGCTTTAATGCTGTTGTTGATCGCTTCTATAGTGTAATTGAGGTTGGTAAAGTTTACATGATATCAAAAGGTAGCTTAAAACATGCACAGAAGAATTTCAACCATTTGAAAAATGAATGGGAAATTTTTTTGGAATCAACTTCAACAGTAGAGCTGTGCCCAGATGAGGATGGTTCTATACCTAGACAGCAGTTCTCCTTCCGGCCTATCAGTGACATTGAGAATGTTGACAATAACTCCATCCTTGATGTTATTGGGGTTGTGACATCTGTGAACCCTTCTGTTCCCATCTTGAGGAAGAATGGAATGGAAACCCAGAGAAGAATTTTGAGTCTAAAAGACAGTTCTGGCAGGAGTGTTGAACTTACACTGTGGGGAGAATTTTGCAACAGGGAAGGGCAACAGTTGCAAGAGATGGTAGATGCTGGAATTTCCCCTATTTTAGCAGTCAAAGCGGGGAAGGTGAGTGATTTTAGTGGAAAGTCGATAGGCTCTATTTCTACCACACAGCTTTTCATAAATCCTGAGTTCCCTGAGGCCAATAGCTTAAGAGAATGGTTTGATCTAGTGGGAAAGGATTCTGCTTCCCTTTCAATTTCTAAGGACGTTATTCCTGGAGGAACAAAGAATGAGGTTCGCAAAACTATATCCCAAATCAAGGATGAAGGTCTGGGACGGTCAGACAAGCCAGACTGGATAACAATAAGGGCAACCATATCATTCGTCAAGACTGATACATTTTGTTACACAGCTTGCCCTCTGATGATTGGTGATCGACAATGCAATAAGAAAGTGACTAGGTCAGGAAACTCAAGATGGCAATGTGATAGATGCAATCAGGAATTTGAGGAGTGCGATTACCGATACCTTCTCCAAGCTCAAATTCTGGATGGCACAGGATTAACTTGGGTAACTGCTTTCCAGGAAGCAGGTGAAGAGATTATGGAGTATTCAGCGAAAGATCTGTACTTGTTGAAACATGAGCAACAGGATGATGAGAGCTTTGGAGAAATAATCAAGAGCCGACTCTTCAAACAGTTTATGTTTAGGCTGAAAATCAAAGAGGAATTATATGGCGATGAACAGAAGGTCAAGATTACTGTAGTTAAGGTAGATAAGGTTAAATATTCTTCAGAGAGTCAATACATGCTTGATTCGATTTCCAAGTTTTGTAGGCAGTGA 2013 0.4282 MLIGVHEFLVHGVNRIDTSSLFTPTEGLSLLRKSKIGGRMSVNLTEKAIPAIIGGDVNAKPLVQVLDVALVSDTNNSQKQRYRLLLSDAVLSHHAMLATQLNDRVRSGQVRKGSVVQLLDYICSPFKNRKIIMVLNMETIIADFEIIGNPKPCVDSDLPSVRALADNTVARSNSNSDNIINSAARNASHDNAQNFRPTIQPPYQPPPVYKGRGAVMKNEAPARIIPIAALNPYQGRWAIRARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYSVIEVGKVYMISKGSLKHAQKNFNHLKNEWEIFLESTSTVELCPDEDGSIPRQQFSFRPISDIENVDNNSILDVIGVVTSVNPSVPILRKNGMETQRRILSLKDSSGRSVELTLWGEFCNREGQQLQEMVDAGISPILAVKAGKVSDFSGKSIGSISTTQLFINPEFPEANSLREWFDLVGKDSASLSISKDVIPGGTKNEVRKTISQIKDEGLGRSDKPDWITIRATISFVKTDTFCYTACPLMIGDRQCNKKVTRSGNSRWQCDRCNQEFEECDYRYLLQAQILDGTGLTWVTAFQEAGEEIMEYSAKDLYLLKHEQQDDESFGEIIKSRLFKQFMFRLKIKEELYGDEQKVKITVVKVDKVKYSSESQYMLDSISKFCRQ 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02696 670 Gene3D - 336 473 IPR012340 -
Phco7g02696 670 NCBIfam replication factor-a protein 1 (rpa1) 43 666 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Phco7g02696 670 FunFam Replication protein A subunit 223 332 - -
Phco7g02696 670 Pfam Replication factor-A protein 1, N-terminal domain 44 140 IPR007199 GO:0003677|GO:0005634|GO:0006260
Phco7g02696 670 FunFam Replication protein A subunit 476 667 - -
Phco7g02696 670 Pfam Replication factor-A C terminal domain 509 660 IPR013955 -
Phco7g02696 670 Gene3D - 42 154 IPR012340 -
Phco7g02696 670 SUPERFAMILY Nucleic acid-binding proteins 223 336 IPR012340 -
Phco7g02696 670 Gene3D - 223 333 IPR012340 -
Phco7g02696 670 CDD RPA1N 48 141 IPR007199 GO:0003677|GO:0005634|GO:0006260
Phco7g02696 670 CDD RPA1_DBD_B 358 465 - -
Phco7g02696 670 SUPERFAMILY Nucleic acid-binding proteins 341 468 IPR012340 -
Phco7g02696 670 CDD RPA1_DBD_A 226 329 - -
Phco7g02696 670 SUPERFAMILY Nucleic acid-binding proteins 490 667 IPR012340 -
Phco7g02696 670 CDD RPA1_DBD_C 493 666 IPR047192 -
Phco7g02696 670 FunFam Replication protein A subunit 43 154 - -
Phco7g02696 670 Pfam OB-fold nucleic acid binding domain 238 321 IPR004365 GO:0003676
Phco7g02696 670 Gene3D - 477 668 IPR012340 -
Phco7g02696 670 Pfam Replication protein A OB domain 347 451 IPR031657 -
Phco7g02696 670 PANTHER REPLICATION FACTOR A 1, RFA1 237 645 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Phco7g02696 670 FunFam Replication protein A subunit 336 475 - -
Phco7g02696 670 SUPERFAMILY Nucleic acid-binding proteins 40 149 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02696 Phco-Chr7 45942424 45948514 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g02696 7 45942424 45948514 Phco7g02696 7 45942424 45948514 ECH