Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02691 ATGGCGTCCGTGTACATACCGGTGCAGAATTCGGAGGAGGAGGTTAGGGTTGCTCTCGATCAGCTTCCGCGTGACGCCTCCGACATCCTCGACATCCTCAAGGCTGAACAAGCTCCTCTCGATCTCTGGCTCATCATTGCGAGGGAGTACTTCAAGCAGGGAAAAATTGATCAATTTCGCCAGATTTTGGAGGAAGGATCCAGTCCAGAAATTGATGACTATTATGCTGATGTTAGATATGAGAGGATTGCTATCTTAAATGCTCTTGGAGCTTACTATAGCTACCTTGGAAAAATAGAGACAAAACAACGAGAAAAGGAGGAACATTTTATTTTGGCAACACAATACTACAATAAAGCATCTAGGATTGACATGCATGAGCCCTCCACTTGGGTTGGGAAAGGTCAGCTTTTGCTAGCAAAGGGTGAAGTAGAACAGGCATCTGCTGCATTTAAGATTGTGTTAGATGGAGTCCGTGATAATGTTCCTGCTCTTTTGGGCCAGGCATGTGTTGAGTTCAACCGTGGACGATACTCAGATTCACTTGATTTGTATAAGAGAGCATTGCTAGTGTTTCCCAATTGCCCGGCAGCTGTGAGACTTGGCATAGGTCTATGTCGCTACAAATTAGGTCAATTTGAAAAGGCTCAGCAGGCATTTGAGCGAGTTTTACATCTAGATCCAGAAAATGTTGAGGCTCTAGTTGCCCTTGCAATAATGGACTTGCGCACTAATGAAGCTATTGGAATCAGGAAGGGAATGGTAAAAATGCAGAGGGCATTTGAGATATACCCATATTGTGCAATGGCTCTGAATTATCTTGCAAATCATTTCTTCTTCACTGGTCAACATTTTTTAGTTGAGCAACTGACTGAAACTGCATTGGCTGTTACCAATCATGGGCCAACAAAGTCTCACTCATACTACAATTTAGCACGCTCATATCATAGCAAGGGAGACTATGACAAAGCTGGGGTGTATTACATGGCATCTGTCAAGGAAGTCAACAAGCCCCACGAATTTGTATTTCCTTATTATGGTCTGGGACAAGTGCAGGTAAAGTTGGGAGATTTTAAAAGTGCACTCTCAAACTTTGAAAAGGTCCTGGAGGTATACCCGGATAATTGTGAGACATTGAAGGCGCTTGGGCATATATATGTTCAGCTTGGTCAAACTGACAAAGGGCAGGACTTTATTAGGAGAGCTACAAAAATTGATCCCCGGGATGCCCAGGCATTTCTTGAGCTGGGAGAATTGTTAATTCTTTCTGACACAGGAGCTGCACTAGATGCATTCAAAACTGCTCGTACTCTTTTTAAGAAGGGAGGTCAAGAAGTACCAATTGAATTACTAAATAATGTTGGTGTGCTTCAGTTTGAAAGGGGTGAATTTGAGCTTGCTCAACAAACATTTAAGGAGGCTCTTGGTGATGGTATTTGGCAATCTTTCATCAATGAGGAAAAAAAGTCTTCTGTTGATGCTGCTACTTCTACTCTTCAATTCAAGGACATGCAATTATTTCATGACTTTGAAAGCAATGGTCATCATGTAGAAGTGCCTTGGGATAAAGTCACTGTACTTTTTAACCTGGCTAGGTTACTTGAGCAGTTAAATGAATCTGGAACTGCCAGCATTTTGTATCGCCTTATCTTGTTCAAGTACCCAGACTATATTGATGCGTATTTGAGGCTAGCTTCAATTGCAAAAGATCGGAACAACATTCTATTAAGCATTGAACTGGTTAATGATGCCTTGAAGGTGAATGACAAGTGTCCCAATGCATTATCTATGCTTGGTGAGTTGGAGTTGAAAAATGATGATTGGGTAAAGGCAAAAGAAACACTCAGAGCAGCAAGTGATGCAACAGATGGCAAGGACTCATATGCTACTCTCTCTCTGGGAAACTGGAACTACTTTGCAGCAGTTCGCAATGAAAAGAGAAATCCCAAGCTAGAGGCTACTCATTTGGAAAAGGCCAAAGAACTTTATACTAGAGTTCTGATTCAGCATTCTTCTAATTTATATGCTGCCAATGGTGCTGCGGTAGTATTAGCAGAGAAAGGCCATTTTGATGTGTCAAAGGATATCTTTACACAGGTTCAAGAAGCTGCCAGTGGTAGTGTTTTTGTCCAGATGCCTGATGTTTGGATAAATCTGGCCCATGTTTATTTTGCTCAGGGGAATTTTGCTTTGGCTGTGAAAATGTACCAAAACTGTTTGCGGAAGTTTTATCATAACACAGACTCTCAAATACTTCTATATTTAGCCCGTACCCATTATGAGGCTGAACAGTGGCAAGACTGTATAAAAACTCTACTGAGAGCCATCCATTTGGCACCCTCAAACTATACTTTAAGGTTTGATGCTGGGGTTGCAATGCAAAAGTTTTCAGCATCAACATTGCAAAAAGCAAAGAGGACTGCGGATGAGGTGAGAGCAACTGTTGCTGAGCTGCAAAATGCTGTTCGTGTATTTAGTCAGTTGTCTGCTGCTTCCAACCTACACATTCATGGGTTTGATGAGAAGAAAATTGACACTCATGTTGGATACTGCAACCACTTACTTTCGGCTGCTAAAGTTCATCTTGAAGCTGCCGAGCGTGAAGAGCAGCAGGTACGGCAGAGACAAGAACTTGCTCGTCAGGTTGCACTTGCAGAGGAAGCCCGACGAAAGGCTGAAGAACAAAGGAAGTTTCAGATGGAAAGGAGAAAACAAGAGGATGAACTAAAGCGAGTGCAACAACAGGAAGAACATTTTAAGCGTGTTAAGGAGCAATGGAAGAGCAACACTCATTCAAAACGGAGAGAAAGATCAGATGATGAAGAGGGAGGGACCGGTGAGAAGAAGAAAAGAAAAAGTGGAAAGAAGAGAAAGAAGGATAAGCACTCAAAATCACGCTATGACACGGAGGAACCGGAAACTGATATGATGGATGAACAAGAAATGGAGGACGAAGAAACTGACGTCTACAGAGAGGAACCTCAGACTCATGGGGAGGAAAATGCTCAGGGTCGTCTTGCTGCAGCGGGGCTTGAAGATTCCGACGCAGATGAGGAGATGGCTGCACCATCCTCAAGCATAGCCCGGCGAAGGCAAGCATTATCGGAATCTGATGATGATGAACCATTGCGAAGGCAGTCAAGTCCTGTAAGAGAAAATTCTGGTGACATGCAGGAGAGTGATGGAGAAATCAGGGATGTGGATAAGACAAATGGAGATGATGGCAGTGATGAGGAGAAACATTATTGA 3249 0.4287 MASVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKIDQFRQILEEGSSPEIDDYYADVRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASAAFKIVLDGVRDNVPALLGQACVEFNRGRYSDSLDLYKRALLVFPNCPAAVRLGIGLCRYKLGQFEKAQQAFERVLHLDPENVEALVALAIMDLRTNEAIGIRKGMVKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYDKAGVYYMASVKEVNKPHEFVFPYYGLGQVQVKLGDFKSALSNFEKVLEVYPDNCETLKALGHIYVQLGQTDKGQDFIRRATKIDPRDAQAFLELGELLILSDTGAALDAFKTARTLFKKGGQEVPIELLNNVGVLQFERGEFELAQQTFKEALGDGIWQSFINEEKKSSVDAATSTLQFKDMQLFHDFESNGHHVEVPWDKVTVLFNLARLLEQLNESGTASILYRLILFKYPDYIDAYLRLASIAKDRNNILLSIELVNDALKVNDKCPNALSMLGELELKNDDWVKAKETLRAASDATDGKDSYATLSLGNWNYFAAVRNEKRNPKLEATHLEKAKELYTRVLIQHSSNLYAANGAAVVLAEKGHFDVSKDIFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAVKMYQNCLRKFYHNTDSQILLYLARTHYEAEQWQDCIKTLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKAKRTADEVRATVAELQNAVRVFSQLSAASNLHIHGFDEKKIDTHVGYCNHLLSAAKVHLEAAEREEQQVRQRQELARQVALAEEARRKAEEQRKFQMERRKQEDELKRVQQQEEHFKRVKEQWKSNTHSKRRERSDDEEGGTGEKKKRKSGKKRKKDKHSKSRYDTEEPETDMMDEQEMEDEETDVYREEPQTHGEENAQGRLAAAGLEDSDADEEMAAPSSSIARRRQALSESDDDEPLRRQSSPVRENSGDMQESDGEIRDVDKTNGDDGSDEEKHY 1082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02691 1082 Coils Coil 801 821 - -
Phco7g02691 1082 SUPERFAMILY TPR-like 653 740 IPR011990 GO:0005515
Phco7g02691 1082 MobiDBLite consensus disorder prediction 895 1082 - -
Phco7g02691 1082 FunFam Protein CTR9 homolog 338 479 - -
Phco7g02691 1082 MobiDBLite consensus disorder prediction 895 949 - -
Phco7g02691 1082 SMART tpr_5 162 195 IPR019734 GO:0005515
Phco7g02691 1082 SMART tpr_5 524 557 IPR019734 GO:0005515
Phco7g02691 1082 SMART tpr_5 713 746 IPR019734 GO:0005515
Phco7g02691 1082 SMART tpr_5 749 782 IPR019734 GO:0005515
Phco7g02691 1082 SMART tpr_5 592 625 IPR019734 GO:0005515
Phco7g02691 1082 SMART tpr_5 342 375 IPR019734 GO:0005515
Phco7g02691 1082 SMART tpr_5 448 483 IPR019734 GO:0005515
Phco7g02691 1082 SMART tpr_5 305 338 IPR019734 GO:0005515
Phco7g02691 1082 SMART tpr_5 558 591 IPR019734 GO:0005515
Phco7g02691 1082 SMART tpr_5 197 230 IPR019734 GO:0005515
Phco7g02691 1082 SMART tpr_5 376 409 IPR019734 GO:0005515
Phco7g02691 1082 SMART tpr_5 128 161 IPR019734 GO:0005515
Phco7g02691 1082 FunFam protein CTR9 homolog 9 336 - -
Phco7g02691 1082 Pfam Tetratricopeptide repeat 718 781 - -
Phco7g02691 1082 Pfam Tetratricopeptide repeat 134 197 - -
Phco7g02691 1082 MobiDBLite consensus disorder prediction 1056 1082 - -
Phco7g02691 1082 PANTHER RNA POLYMERASE-ASSOCIATED PROTEIN CTR9 1 1077 IPR031101 GO:0006355|GO:0016570
Phco7g02691 1082 ProSiteProfiles TPR repeat profile. 197 230 IPR019734 GO:0005515
Phco7g02691 1082 Coils Coil 855 922 - -
Phco7g02691 1082 SUPERFAMILY TPR-like 106 295 IPR011990 GO:0005515
Phco7g02691 1082 ProSiteProfiles TPR repeat profile. 376 409 IPR019734 GO:0005515
Phco7g02691 1082 FunFam protein CTR9 homolog 507 650 - -
Phco7g02691 1082 Pfam Tetratricopeptide repeat 202 230 IPR013105 -
Phco7g02691 1082 ProSiteProfiles TPR repeat profile. 342 375 IPR019734 GO:0005515
Phco7g02691 1082 SUPERFAMILY TPR-like 308 793 IPR011990 GO:0005515
Phco7g02691 1082 Gene3D Tetratricopeptide repeat domain 515 650 IPR011990 GO:0005515
Phco7g02691 1082 ProSiteProfiles TPR repeat region circular profile. 342 375 - -
Phco7g02691 1082 Gene3D Tetratricopeptide repeat domain 651 835 IPR011990 GO:0005515
Phco7g02691 1082 Pfam Tetratricopeptide repeat 355 412 - -
Phco7g02691 1082 Pfam Tetratricopeptide repeat 306 333 IPR019734 GO:0005515
Phco7g02691 1082 ProSiteProfiles TPR repeat region circular profile. 197 230 - -
Phco7g02691 1082 Gene3D Tetratricopeptide repeat domain 8 334 IPR011990 GO:0005515
Phco7g02691 1082 Gene3D Tetratricopeptide repeat domain 335 498 IPR011990 GO:0005515
Phco7g02691 1082 FunFam Rna polymerase-associated protein ctr9 651 835 - -
Phco7g02691 1082 MobiDBLite consensus disorder prediction 1032 1047 - -
Phco7g02691 1082 ProSiteProfiles TPR repeat profile. 713 746 IPR019734 GO:0005515
Phco7g02691 1082 MobiDBLite consensus disorder prediction 972 989 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02691 Phco-Chr7 45885388 45898400 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g02691 7 45885388 45898400 Phco7g02691 7 45885388 45898400 ECH