Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02659 ATGTTCGAGATTATAACAGATGGTATGACAGAGAAAAGACTCAGTCAAACTCGTACCAATTTCAAGAAAGAATGGGTTTTATTATCTACATCATTTCATCTTTCAACGCTCCTTCTTCTCCACCCAAACCTCTCTTCTTCGCGTCTGCCAAGTGTAAGTAGGCTCCAATCAATGGCCAGCGCTCAGCTCACAGCAATAGCGTCATCAGTCTCCACGACTTCGTTTGAAAGGCTTCGGCCTTCAGCATTTCAGACGGGCCGTGTGAGGATTGGGAATCTCCCCCAAAGGTCCTTCCGGGGTTTGGTTGTCAAAGCCGCCACTGTTGTTGCCCCTAAGTACACTGCAATTAAGCCTCTGGGTGACAGAGTACTGGTAAAAGTTAAGGAAGCGGACGAGAAAACTGAAGGTGGGATTTTGCTTCCCTCAACTGCTCAAACGAAGCCTCAAGGGGGTGAGGTGGTTGCTGTTGGTGAAGGAAAGGCAGTTGGGAAGACAAAAGTGGATGTTAGTGTGAAGTCAGGTGCGCAAGTTGTGTATTCCAAATATGCTGGTACTGAGGTAGAATTCAATGGTACAAAGCATCTTATTTTGAAGGATGATGATATTGTTGGTATACTTGAAACTGATGACATCAAGGATCTTAAGCCCTTGAATGATAGAGTCCTCATAAAGATTGCTGAAGCTGAGGAAAAAACTGCTGGTGGTTTGTTTCTTACTGAGGCAACCAAGGAGAAGCCTTCTATTGGAATAGTGATAGCAGTTGGTCCAGGGCAATTGGACGATGAAGGCAACAGAAAGCCATTATCCGTGACTCCGGGGAACACAGTTTTGTACTCCAAATATGCTGGAAATGACTTCAAGGGCAAAGATGGTGACTATATTACCTTGAGGGTCTCAGATGTCATGGCTGTCCTCTCCTAG 921 0.4539 MFEIITDGMTEKRLSQTRTNFKKEWVLLSTSFHLSTLLLLHPNLSSSRLPSVSRLQSMASAQLTAIASSVSTTSFERLRPSAFQTGRVRIGNLPQRSFRGLVVKAATVVAPKYTAIKPLGDRVLVKVKEADEKTEGGILLPSTAQTKPQGGEVVAVGEGKAVGKTKVDVSVKSGAQVVYSKYAGTEVEFNGTKHLILKDDDIVGILETDDIKDLKPLNDRVLIKIAEAEEKTAGGLFLTEATKEKPSIGIVIAVGPGQLDDEGNRKPLSVTPGNTVLYSKYAGNDFKGKDGDYITLRVSDVMAVLS 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02659 306 Gene3D GroES chaperonin 209 306 IPR037124 GO:0006457
Phco7g02659 306 Gene3D GroES chaperonin 108 208 IPR037124 GO:0006457
Phco7g02659 306 PANTHER 10 KDA HEAT SHOCK PROTEIN 212 304 IPR020818 GO:0005524|GO:0006457|GO:0044183
Phco7g02659 306 FunFam 20 kDa chaperonin, chloroplastic 109 208 - -
Phco7g02659 306 Hamap Co-chaperonin GroES [groES]. 213 306 IPR020818 GO:0005524|GO:0006457|GO:0044183
Phco7g02659 306 CDD cpn10 214 305 IPR020818 GO:0005524|GO:0006457|GO:0044183
Phco7g02659 306 ProSitePatterns Chaperonins cpn10 signature. 214 238 IPR018369 GO:0005524|GO:0006457
Phco7g02659 306 Hamap Co-chaperonin GroES [groES]. 115 207 IPR020818 GO:0005524|GO:0006457|GO:0044183
Phco7g02659 306 PRINTS 10kDa chaperonin signature 138 159 IPR020818 GO:0005524|GO:0006457|GO:0044183
Phco7g02659 306 PRINTS 10kDa chaperonin signature 116 131 IPR020818 GO:0005524|GO:0006457|GO:0044183
Phco7g02659 306 PRINTS 10kDa chaperonin signature 172 184 IPR020818 GO:0005524|GO:0006457|GO:0044183
Phco7g02659 306 PRINTS 10kDa chaperonin signature 193 206 IPR020818 GO:0005524|GO:0006457|GO:0044183
Phco7g02659 306 Pfam Chaperonin 10 Kd subunit 214 304 IPR020818 GO:0005524|GO:0006457|GO:0044183
Phco7g02659 306 Pfam Chaperonin 10 Kd subunit 116 205 IPR020818 GO:0005524|GO:0006457|GO:0044183
Phco7g02659 306 FunFam 10 kDa chaperonin 212 306 - -
Phco7g02659 306 SUPERFAMILY GroES-like 212 305 IPR011032 -
Phco7g02659 306 SMART Cpn10_2 213 305 IPR020818 GO:0005524|GO:0006457|GO:0044183
Phco7g02659 306 SMART Cpn10_2 115 206 IPR020818 GO:0005524|GO:0006457|GO:0044183
Phco7g02659 306 SUPERFAMILY GroES-like 114 207 IPR011032 -
Phco7g02659 306 ProSitePatterns Chaperonins cpn10 signature. 116 140 IPR018369 GO:0005524|GO:0006457
Phco7g02659 306 CDD cpn10 116 206 IPR020818 GO:0005524|GO:0006457|GO:0044183
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02659 Phco-Chr7 45536558 45541810 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g02659 7 45536558 45541810 Phco7g02659 7 45536558 45541810 ECH
Phco8g01971 8 20944733 20946728 Phco7g02659 7 45536558 45541810 PCT