Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02657 ATGGGGACGAAGAAGCTTAGCGAGGGAGTGAAAAGCGAGGGTAATGGCAGCAACGACAACGTTTTTGCTTCATGCTCCTTCTCCAGCCTTGGCCTTGATTCCAATTTGTGTGAACAACTTCGTGAGAGGTTGGGGTTTGAAGTTCCGACGCAGGTGCAAGCTCAAGCGATTCCTGTTATTCTCTCTGGGCGTCATGCATTGGTAAATGCTGCAACGGGCACGGGGAAGACTGCTGCGTATCTCGCTCCCATTGTTCATCACTTGCAGGGTTATGAAAATCGAATTCAGCGCTCTGATGGGACATTTGCGTTGGTTCTTGTACCAACGCGTGAGCTATGTTTGCAGGTTTATGAAATTCTTCAGAAGTTATTGCATCGGTTTCATTGGATTGTTCCAGGATACATTATGGGTGGAGAAAATAGATCGAAGGAGAAAGCCAGGCTGCGCAAAGGCATATCAATTCTTATAGCAACTCCTGGGCGTCTTTTGGATCACTTAAAGAACACAACATCATTCTTGCACTCAAATCTGCGCTGGATAATTTTTGATGAAGCTGATCGAATTTTGGAATTAGGATTTGGAAAAGATATAGAGGAAATACTTGATCTTTTAGGTTCGAGGAAAACACTGCATGATGACCAAGAGAATACAGTTCCAAGGAACTCTAAAATTCAAAGACAGAATTTGCTTTTATCTGCTACCTTAAACGAGAAAGTGAACCACCTTGCTAAAATTAGTCTGGACAATCCAGTGATGGTTGGTCTTGATGTGAAGAAAATAGAACAAATTTCAACAGCTGTAAGCAATGATCATTCAGAATCTGATGAAGATAATGAAGACCAGTATTCCAGTAAAATGCCAATAGTTGGAGATTACAAAGTTCCTATACAGTTGATTCAGAGATACATGAAAGTGCCTTGTGGTACACGGCTACCTGTACTTCTTTCAATTATAAAGCATCTCTTTGAAAGGGAACCTTCACAAAAGGTTGTTGTATTCTTTTCAACATGCGATGCTGTAGATTTTCACTATTCACTGTTAAGTGAATTTCAATTTTCATCCCATTCACAAACAGAAGGGACCCGACAGAAGTTTCTTGGATGCAAAACTTTTCGGTTACATGGTAATATGGTGCAGGAGGACCGGAGAACCAGTTTTCAGACCTTTAAAACTGAGAAATCTGCTTTACTTTTGACTAGTGATGTTTCTGCTAGAGGCCTGGATTTTCCCAAGGTTAGATGCATCATACAATATGATTCTCCTGGGGAAGCTACGGAATATGTTCATAGGGTTGGTAGAACTGCTCGACTGGGTGAAAAAGGAGAGTCGTTGCTTTTTCTGCAACCAGTTGAGATAGACTATTTACAGGACTTGGAAACACATGGTGTCGCACTCACAGAGTATCCCGTCCTCAAAGTGTTGGATAGTTTTCCACTATATGGACAAAACCACATAAAGAAGTCAGTGTTCTTAGATTCACATCCCTGGGTGCTTTGTCTCCAGAAGGCACTTGAAGCTTTCATCATGTCGAAGCCCGAGGTGGATAAACTTGCCAAGAAGGCATTTTGCTCTTGGGTTCGCGCATACACTGCCCATCGTGGTGAGTTGAAAAGAATATTTATGATCAAGAAACTTCATTTGGGGCACGTAGCAAAAAGCTTTGCATTGAAACAACAACCTTCCTTAGTTGGACAGTCATTCCAAAAGCAAGAAAAGAAAAGAAAGCGATTTGAGAAGAAAACTGGGTTCTCAAAAAAGAGAAAAGTTGCGAGTGTGAGAGAACGCAGACCATGA 1794 0.4164 MGTKKLSEGVKSEGNGSNDNVFASCSFSSLGLDSNLCEQLRERLGFEVPTQVQAQAIPVILSGRHALVNAATGTGKTAAYLAPIVHHLQGYENRIQRSDGTFALVLVPTRELCLQVYEILQKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILIATPGRLLDHLKNTTSFLHSNLRWIIFDEADRILELGFGKDIEEILDLLGSRKTLHDDQENTVPRNSKIQRQNLLLSATLNEKVNHLAKISLDNPVMVGLDVKKIEQISTAVSNDHSESDEDNEDQYSSKMPIVGDYKVPIQLIQRYMKVPCGTRLPVLLSIIKHLFEREPSQKVVVFFSTCDAVDFHYSLLSEFQFSSHSQTEGTRQKFLGCKTFRLHGNMVQEDRRTSFQTFKTEKSALLLTSDVSARGLDFPKVRCIIQYDSPGEATEYVHRVGRTARLGEKGESLLFLQPVEIDYLQDLETHGVALTEYPVLKVLDSFPLYGQNHIKKSVFLDSHPWVLCLQKALEAFIMSKPEVDKLAKKAFCSWVRAYTAHRGELKRIFMIKKLHLGHVAKSFALKQQPSLVGQSFQKQEKKRKRFEKKTGFSKKRKVASVRERRP 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02657 597 Pfam DEAD/DEAH box helicase 50 241 IPR011545 GO:0003676|GO:0005524
Phco7g02657 597 CDD SF2_C_DEAD 298 447 - -
Phco7g02657 597 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 181 189 IPR000629 -
Phco7g02657 597 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 57 253 IPR014001 -
Phco7g02657 597 Gene3D - 3 256 IPR027417 -
Phco7g02657 597 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 22 253 IPR027417 -
Phco7g02657 597 CDD DEADc_DDX31 36 254 - -
Phco7g02657 597 MobiDBLite consensus disorder prediction 565 597 - -
Phco7g02657 597 Pfam Domain of unknown function (DUF4217) 501 561 IPR025313 -
Phco7g02657 597 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 313 485 IPR001650 -
Phco7g02657 597 SMART DUF4217_3 499 564 IPR025313 -
Phco7g02657 597 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 25 54 IPR014014 GO:0003724
Phco7g02657 597 SMART helicmild6 356 438 IPR001650 -
Phco7g02657 597 FunFam RNA helicase 3 255 - -
Phco7g02657 597 Pfam Helicase conserved C-terminal domain 316 438 IPR001650 -
Phco7g02657 597 SMART ultradead3 45 263 IPR014001 -
Phco7g02657 597 PANTHER RNA HELICASE 24 568 - -
Phco7g02657 597 Gene3D - 309 592 IPR027417 -
Phco7g02657 597 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 454 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02657 Phco-Chr7 45480796 45487024 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g02657 7 45480796 45487024 Phco7g02657 7 45480796 45487024 ECH