Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02642 ATGTTCAATTCTCAAACCTCGCCACCGCCGCTGCCGGTGATGACTCCGCCGGCAACCCCCCTTAACTATGAAACGACATCGCACAAGAAAAGTCGCAGAACCACCGGAGTTCCCGCTCCTCTTCCTCATTCAGTGGAAGTGATTGACGTTGACGATTTCACTCCCTCCTCCTTTTTCACGCCAATCTCCTTCCGAGGCACGATCAAGTCAAACGCGGTCTCCATGGACCCACATGACGGTGTTTCCAAACCTGTCCACATCGTCGACCTCTCCGACACCGAGGACGACGATGATCTCCGTATCCTCAATTTCATTCCCGCAAACACCTCCTTTGGCAAACGGAAAAGGTTCACGGGAGAATCCTCCGATGCAGTCCCCTTCGTCTGCGAAATCTGCACTGAAACCAAAACCTCCAGGGAGGCTTTCTCCATCAACGGCTGCTGCCACGTCTACTGCAAACACTGCATCGCTCTCTATGTCGAATCGAAACTCCAGGATAACGTCGTCAACATAGGCTGCCCTGTGCCGCGATGCAGGGGGTTACTGGAAGCGGAAGATTGCCGCTCGATTCTTGCCCCTGAGATTTTGGATCGGTGGGGTAAAGCGCTGTGCGAGGCGGTGATTTCTGTGGAGGAGAAGTTCTACTGTCCTTTTCCAGATTGCTCTGTGCTGTTGATTCGCGAGGAGAAGGATGAGGGTATCAGAGAATCGAATTGTCCAAACTGTGTGAGGGTGTTCTGTGCGCTGTGTAGAGTACCCTGGCACGAGGACATGTCCTGTGAGGAGTTTCAAAAGCTGAACGCCGAAGAGAGGGGAAGAGAAGATGTGATGTTGAGAAACCTTGCTAAGCAAATGATGTGGAAGAGATGCCCCACTTGTGGGTTTTACGTTGCCAAAACCTCTGGCTGCATGTACATGAAATGCAGGTGTGGAAGTGCCTTCTGTTACAACTGTGGGGTTCCTAACTTAACTCCCTTCCATCATTGCATGTCCTGTAGACGGTAA 1005 0.5184 MFNSQTSPPPLPVMTPPATPLNYETTSHKKSRRTTGVPAPLPHSVEVIDVDDFTPSSFFTPISFRGTIKSNAVSMDPHDGVSKPVHIVDLSDTEDDDDLRILNFIPANTSFGKRKRFTGESSDAVPFVCEICTETKTSREAFSINGCCHVYCKHCIALYVESKLQDNVVNIGCPVPRCRGLLEAEDCRSILAPEILDRWGKALCEAVISVEEKFYCPFPDCSVLLIREEKDEGIRESNCPNCVRVFCALCRVPWHEDMSCEEFQKLNAEERGREDVMLRNLAKQMMWKRCPTCGFYVAKTSGCMYMKCRCGSAFCYNCGVPNLTPFHHCMSCRR 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02642 334 SUPERFAMILY RING/U-box 203 265 - -
Phco7g02642 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 210 IPR013083 -
Phco7g02642 334 ProSitePatterns Zinc finger RING-type signature. 147 156 IPR017907 -
Phco7g02642 334 FunFam RBR-type E3 ubiquitin transferase 124 210 - -
Phco7g02642 334 CDD Rcat_RBR_unk 286 322 - -
Phco7g02642 334 SMART ibrneu5 197 260 IPR002867 GO:0008270
Phco7g02642 334 SMART ibrneu5 270 332 IPR002867 GO:0008270
Phco7g02642 334 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 47 325 IPR031127 GO:0004842|GO:0016567
Phco7g02642 334 Pfam IBR domain, a half RING-finger domain 205 260 IPR002867 GO:0008270
Phco7g02642 334 Pfam IBR domain, a half RING-finger domain 278 332 IPR002867 GO:0008270
Phco7g02642 334 SUPERFAMILY RING/U-box 271 333 - -
Phco7g02642 334 SUPERFAMILY RING/U-box 127 206 - -
Phco7g02642 334 ProSiteProfiles TRIAD supradomain profile. 125 334 IPR044066 -
Phco7g02642 334 ProSiteProfiles Zinc finger RING-type profile. 129 177 IPR001841 -
Phco7g02642 334 CDD BRcat_RBR_unk 212 263 - -
Phco7g02642 334 Gene3D - 262 334 - -
Phco7g02642 334 Gene3D - 214 261 - -
Phco7g02642 334 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02642 Phco-Chr7 45324262 45326014 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g02642 7 45324262 45326014 Phco7g02642 7 45324262 45326014 ECH