Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02439 ATGAAGGTCCGGTCGGTGAAGTTAAGGGAGGCCCACGGTGCCATTGGAGGGCGCGCGTCTTTCTGCTCCGTTCTGTGGGACCAGCAAGCCAATCATTTGGTTACCGCTTCCTCTTCCGACATCTCCATCTGTATCCACGACCCCCTTTCCCCCTCCATCTCTCCCAAAATCCTCCGCCACCACCGCGACGGTGTCACTGCCTTGGCTCTTAGCCCCAATTCCACTTGCCTCGCTTCCGGATCTATCGATCGTTCCGTCAAACTCTATAAGTTCCCCGGTGGAGAGTTTGAGAGAAATATTACAAGGTTTACACTTCCAATACGTTCCCTGGCATTTAACAAATCAGGCAGCATGGTGGCTGCTGCTGGTGATGATGAGGGTATCAAGCTTATTAATACATTTGATGGTACCATTACTAGGGTTCTTAAAGGACATAAAGGGTCTGTCACTGGCTTGGCTTTTGATCCTAATGGCGAATACTTAGCCTCTATGGATTCAACTGGAACTGTTATTTTGTGGGAGCTTCAGTCTGGGAAAATCATTCATAACCTCAAAGGCATAGCTCCTGACACTGGACTAGATATTTCAGCTATGAATGTTCTTTGCTGGAGTCCTGATGGTGAGACCTTAGCTGTTCCTGGTTTGAAAAATGATGTTGTAATGTATGACAGGGATACTGCTGAGAAGTTGTTTTCTTTGAGAGGAGATCACATACGGCCAATATGTTTCTTGTGTTGGTCACCCAATGGCAAGTACATTGCTACCTCTGGTTTAGACAGGCAGGTTCTGATCTGGGATGTTAGTAGGAAGCAGGACATTGACAGACAGAGGTTTGATGAAACAGTGTGTTGCATGGCGTGGAAGCCAATTGGAAACGCTTTGGCTGTTGTGGATGTTATGGGGAAGTATGGTATTTGGGACAATGTTATTCCTTCGTCTATGAAGTCCCCAACTGAGGATATACCTGTGAAATACAAGAGCAATGGGGTTCTTTTGTTTGATGAGGAGGATCATGAAAATAGTGCAAGTGGAAGCTTGAGTGATATTGGTGAAAAGAGTAATGAGGAGTCTGAGCCAACCAGCAGGAAAAGATTGCGTAAGCATTCTTTGAGTGAGGAAAATTTAGGTGAGGATGAATGTGAGGAAATTGCATTGTATCCGAAGGTTGGTTCTCACAATAAACGAAATCGATCAAGCAAGGAAAATTTGGATAGTAAGAATATGGGATTTAGAGGCACCATGGTAACATCAAAAGCAAAGATGCCGGAGGCATTTCAACCAGGATCTACTCCTTTGCAGCCAGGGAAAAGGCGTTTCTTATGCTACAATATGCTTGGATGTATAACCTCTATTGAACACGATGGATACTCCCATATTGAGATTGATTTTCATGATACTGGAAGCACTCCACGAGTTCCTTCAATGACTGATCATTTTGGATTCACAATGGCAGCATTGAGTGAGAATGGGGGCGTCTTTGCAAATCCTTGTAAGGGGGAGAAGAACATGAGCACCCTCATGTATCGCCCATTTAGTAGCTGGGCCAACAATAGCGAGTGGTCTATGCGCTTTGAAGGAGAAGAAGTGAAGGTTGTTGCACTTGGCGCTGCTTGGGTTGCTGCAGTAACTAGTTTGAACTATCTTCGCATCTTTTCTGATGGTGGTTTGCAGAAACATGTGTTTTCACTAGATGGACCAGTGTTGACTGCGTCCGGTTTCAATGAGAAGCTTGCAGTTGTCACTCATGCTTTTGATTGCCTTTCCTCAAATGATCAGATGCTAGAGTTTATAGTATTTAATATCCCTCAAGGGATCCAACTCCTTCAAGGTCGCATGCCAATATCTCCTGGTTCATCCCTAAGTTGGTTTGGGTTTAGCGAGGAAGGCCAACTGTGTTCATACGATTCGAAGGGTGTGCTAAGATCATATACAAGCCAATTTGGTGGCAGATGGGTCCCACTCTTCAGTGCTTTAAAAGAGAATTCAAAAGAAAACTACTGGGTGACGGGGTTGAATGCAAGCAAGTTATTTTGTGTGGTATGCAAAAAGCCTGATGACTTCCCTCAGGTCATGCCTAAGCCAGTTCTCACTCCGTTGAGTCTTTCATTTCCCCTTGCTTCCTCTGACTTGGGATCTGAAGTCCATGAAAACCAGTTTATGATGAACAACTTGCATCTCTTTATGATTCAGAGAAGAATGGAAGAAATGGCATCTCTAGGTCTGGACACTACTTCACTTGATGATGATGCTTTCAATTTGGAAGCAGCGCAGGATAAATGTATACTGAGGCTAATAGCATCATGCTGCAACAGCAATAAGCTTGTGCGAGCTACTGAACTTGTGAAACTTTTGACTCTGGAAAAATCAGTGAGAGGTGCAATAAAACTTGTTACTGCTCTGAAACTTCCAAACTTGGCTGAAAGGTTCAGCAGCATATTGGAGGAAAGGCTACTTGATGAAGCAGAAAAAGCTATGGAAACCAACGTCAAAGAAAACTGTGTTGCACCCATTAAAGCTGATGCTCTTCATAACGGAAGCAAGGCCCCAACTCGAACTGAAACATTAAATGCAGTTACTATGTCATCACCAGAATTATCCTCTCCATCATTCATAAAGAAACACAAAACTCAAGAGGGAGCTAAAGCTGGCATAATTAGAACTGCAATGGTAAATGAAACTATGAAGGGAAAGCAGACAGGGGAAGAAACAAGGGACAAGGTGGGAGACATGCGTCAGGTGGAACAGACTCCTCATCCATCATATGATCCCTCTACGAAGTCATCAAAGAAGAATGGACTTGACAAATCAGACTCTAGTTTAGGACAACCCAATCGTCCGTCCAATCCATTTTTGAAGTCTACTATCAAGTGA 2871 0.4396 MKVRSVKLREAHGAIGGRASFCSVLWDQQANHLVTASSSDISICIHDPLSPSISPKILRHHRDGVTALALSPNSTCLASGSIDRSVKLYKFPGGEFERNITRFTLPIRSLAFNKSGSMVAAAGDDEGIKLINTFDGTITRVLKGHKGSVTGLAFDPNGEYLASMDSTGTVILWELQSGKIIHNLKGIAPDTGLDISAMNVLCWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHIRPICFLCWSPNGKYIATSGLDRQVLIWDVSRKQDIDRQRFDETVCCMAWKPIGNALAVVDVMGKYGIWDNVIPSSMKSPTEDIPVKYKSNGVLLFDEEDHENSASGSLSDIGEKSNEESEPTSRKRLRKHSLSEENLGEDECEEIALYPKVGSHNKRNRSSKENLDSKNMGFRGTMVTSKAKMPEAFQPGSTPLQPGKRRFLCYNMLGCITSIEHDGYSHIEIDFHDTGSTPRVPSMTDHFGFTMAALSENGGVFANPCKGEKNMSTLMYRPFSSWANNSEWSMRFEGEEVKVVALGAAWVAAVTSLNYLRIFSDGGLQKHVFSLDGPVLTASGFNEKLAVVTHAFDCLSSNDQMLEFIVFNIPQGIQLLQGRMPISPGSSLSWFGFSEEGQLCSYDSKGVLRSYTSQFGGRWVPLFSALKENSKENYWVTGLNASKLFCVVCKKPDDFPQVMPKPVLTPLSLSFPLASSDLGSEVHENQFMMNNLHLFMIQRRMEEMASLGLDTTSLDDDAFNLEAAQDKCILRLIASCCNSNKLVRATELVKLLTLEKSVRGAIKLVTALKLPNLAERFSSILEERLLDEAEKAMETNVKENCVAPIKADALHNGSKAPTRTETLNAVTMSSPELSSPSFIKKHKTQEGAKAGIIRTAMVNETMKGKQTGEETRDKVGDMRQVEQTPHPSYDPSTKSSKKNGLDKSDSSLGQPNRPSNPFLKSTIK 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02439 956 SUPERFAMILY WD40 repeat-like 19 307 IPR036322 GO:0005515
Phco7g02439 956 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 142 179 - -
Phco7g02439 956 ProSiteProfiles Trp-Asp (WD) repeats profile. 234 275 IPR001680 GO:0005515
Phco7g02439 956 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 234 268 - -
Phco7g02439 956 Pfam WD domain, G-beta repeat 138 173 IPR001680 GO:0005515
Phco7g02439 956 Pfam WD domain, G-beta repeat 56 89 IPR001680 GO:0005515
Phco7g02439 956 Pfam WD domain, G-beta repeat 231 266 IPR001680 GO:0005515
Phco7g02439 956 MobiDBLite consensus disorder prediction 934 956 - -
Phco7g02439 956 MobiDBLite consensus disorder prediction 890 956 - -
Phco7g02439 956 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 58 90 - -
Phco7g02439 956 CDD WD40 22 310 - -
Phco7g02439 956 ProSiteProfiles Trp-Asp (WD) repeats profile. 58 99 IPR001680 GO:0005515
Phco7g02439 956 FunFam Transducin family protein / WD-40 repeat family protein 195 322 - -
Phco7g02439 956 SMART WD40_4 177 223 IPR001680 GO:0005515
Phco7g02439 956 SMART WD40_4 135 174 IPR001680 GO:0005515
Phco7g02439 956 SMART WD40_4 226 266 IPR001680 GO:0005515
Phco7g02439 956 SMART WD40_4 268 307 IPR001680 GO:0005515
Phco7g02439 956 SMART WD40_4 51 90 IPR001680 GO:0005515
Phco7g02439 956 SMART WD40_4 93 132 IPR001680 GO:0005515
Phco7g02439 956 SMART WD40_4 2 47 IPR001680 GO:0005515
Phco7g02439 956 ProSiteProfiles Trp-Asp (WD) repeats profile. 142 183 IPR001680 GO:0005515
Phco7g02439 956 MobiDBLite consensus disorder prediction 340 373 - -
Phco7g02439 956 Pfam Minichromosome loss protein, Mcl1, middle region 424 705 IPR022100 -
Phco7g02439 956 ProSitePatterns Trp-Asp (WD) repeats signature. 253 267 IPR019775 -
Phco7g02439 956 PANTHER WD REPEAT AND HMG-BOX DNA BINDING PROTEIN 1 954 - -
Phco7g02439 956 Gene3D - 193 322 IPR015943 GO:0005515
Phco7g02439 956 MobiDBLite consensus disorder prediction 351 373 - -
Phco7g02439 956 Gene3D - 2 192 IPR015943 GO:0005515
Phco7g02439 956 MobiDBLite consensus disorder prediction 897 912 - -
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g02439 7 42561442 42566371 Phco7g02439 7 42561442 42566371 ECH