Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02432 ATGTCAGAGAGCAACCATAAGGAAATCCAAATCCGTGCCCTAACTGGCGAATCAATCACTCTTCCCGTCACCCCCACCACAACCCTCCACCACCTGAAGCTTCTCCTCCGCCATTCATTTCCCCCGGCCACCACCTCCCCCAATTTCCACCTCTTTTTCAAGGGTGACAAATTGCGATTGCAGACTCAAATTGCTTCTTACCCCATCCAACGCGACGAGTTTCTCGTCCTCATTCCGTTTACCAAAAAGGAAAAGGAACCTTCCACAACATCCGACTCTCTTCAACCTAATGTTCCTCAAACTACCAATGCTTCAAGTTCAACCTCTGATCTCGCGGATTCTACGTGGTCCTCCATAAAGGAGGATTTATCACTTTTACGCGACGCAACTGAGAATAATGCGTCTAATTCCGAGTTAGGAAAAGAAAAACCGTCGGAGACCTCAACCGAAGGGGCTTTAGGTCCTGAAAAGCAGATAGAGCTTCCGTATCATTTCATACTGAACACATTGAGGGAAAGTAGCGATGGTCCTCTTGGTGAGCACAATTGCGAGGTTTTCGCCAAGGTTTTGGAGTCCGTCAATTGTTTATCGGAACTGCCGTTCGGACACTGCAAGTTGCTGAAACGAGCTCGTCCGAAAGGAGGTGGCGGCGGCGGCGGCCTGAAAAAACGTGTCAGTGACGGTGCTATATGTTTGTGTCCACCGTGGTTGAAGATAGTGGTGAAGGCGTTTGCATTTGTGAACATTTTTTCCGCGTTTATTTATTTGCAGCTTAGAGAGTTGACCTCGATTCTGCTGGAGGAGGCGCTTAGTGAGCTTGCTAAGTTTGGGGTTAATCTTGGCCTCGGTGACATTAAGAATCTTTCGCTTCTTTGTCCTCATCTGGTATGTTTCAGAGATGATGTAGAGAAGACAAGTTTTGATGATATCATTGTTGTCCTTAATCATTCAACAGGCAATGATGATCTAGTTGAAGACAATCCTAAAAGAGTGCGCAAGTGGTTGTATGTTTCAAAGACTGTCAGTACATTGAAGAGAAGGGATAGTTCTTTCCGTAAAATTCTAGGGTGGGCTTTTGAACAACTGCCGTATGAATTTGGAGATGAGATGACTGTGGGGATTTCCTTGGAAGAGTTGCTTGCAGCAGTCAAGGACGATGATTTTGTCAAAAAAGAAGACAAATCAAAACGTGTAAAGAGAAGAAAAACTACCTCAAAATCTGACTTAAACCATATTGGGTGTCATGACACAAAGTCATTACTGGCTGTGGAGATGATTGATCATCTTAGGAAAGGAATTGGATCAGAAGGGCAGATTGTGCACATTGAAGACATATGTGCCAGAAAAGCGATTTACAGTAAGATCCATCTTGATCTATCAGAGAAAATGAGATCTGCACTGAAGTGTATTGGGGTTTCCAAATTTTACAGTCACCAGGCAGAGTCTATACAAGCTTCCCTTCATGGCGAAAATGTTGTTGTGGCTACAATGACATCTAGTGGCAAATCCCTTTGCTATAATCTACCAGTTCTAGAAGTGTTGTCCATGAATTCATCTTCATGTGCTTTGTACATATTTCCTACAAAGGCATTAGCTCAAGATCAACTAAGAGCGTTGTTACACATGACTAAAGGATTTGATAATGACTTTAATATTGGTATATATGATGGTGATACTTCTCACAGTGAGAGGATGTGGCTCCGTGATAATTCTAGATTGTTGATCACAAATCCAGATATGTTACACATATCAATCTTGCCCCATCATCAACAGTTTAGTCGGATTTTATCAAACCTAAGGTTTGTGGTAATTGATGAAACTCATACTTACAAGGGAGCATTTGGAAGTCACACTGCCCTTATCTTGAGGAGGCTCAAACGACTCTGTTCACATGTATATGGATCTGTTCCTTCTTTTGTTTTTTCTACTGCAACTTCTGCAAATCCTCGGGAGCATTCTATGGAACTTGCAAATTTATCTACGCTAGAGCTATTTCAGAATGATGGAAGTCCATCTACAAGGAAACTTTTTGTCCTTTGGAACCCTGCTTTGCGTCCAAAAGCTATCATTAAAAAACCTCAGTTTGCTATGGGTACTGATGAATTGGCTGATGAAAGTGCTAATTTTGTTCGTTCAAGCCCAATTGTGGATGTTTCACGTCTTTTTGCAGAAATGGTTCAGCATGGTCTTCGCTGTATTGCATTTTGTAAATCACGGAAACTTTGTGAGCTTGTTTTATCCTACACCCGTGAGATTCTTCATGAGACAGCCCCGTGGCTGGTGGATTCCATATGTGCATATCGTGGTGGCTACATGGCAGAGGAAAGAAGAAAAATAGAGAGTTCATTTTTTGGTGGTAAAGTACGTGGTGTTGCTGCAACTAATGCTCTTGAGTTGGGTATTGATGTTGGAGAAATTGATGCCACTCTGCATCTAGGATTTCCGGGTAGTATTGCGAGCTTGTGGCAACAAGCTGGTAGAGGTGGGAGGAGAGATAAACCATCTCTTGCTGTCTATGTTGCATTTGGGGGCCCTCTGGATCAATACTTCATGAGACATCCAAATAAACTTTTTGGAAGACCAATTGAATGTTGTCATGTTGATTCTCAAAACAAGAAGATTCTTGAGCAACATTTGGTCTGTGCTGCTAATGAATACCCTCTATGTGTGAACTACGATGAACAATATTTTGGTCCTTGCTTGGAGAGTGTTATAATTTCTCTAAAAGCTAGAGGATACTTGAGTTCTGTTCTATCTTCTGATTCTTCTAGAATGTGGAACTACATTGGCCCTGAGAAATTACCCTCACACGCAGTCAATATCCGAGCAATAGAAAATGTAAGATACAGTGTCATAGATCAGAAAAAAAATGGAGTCCTTGAAGAGATAGAGGAAAGCAAGGCATTCTTTCAGGTATATGAAGGTGCTGTGTATATGTGCCAGGGGAGAACCTATTTGGTTGAAAAATTAGATCTATCCAATAAAACTGCTTTCTGCAAAGAGGCTGATCTAAAGTATTATACAAAGACTCGAGATTACACTGATATTCATGTCATTGGGGGCAATGTTGCTTATCCACTCAAGGTAGAAACCGACATGTTTCCAAAATCAAATGCCCGGGCTGATGTATGCAAAGTAACAACTACTTGGTTTGGTTTTTATCGTATTTGGAGAGGAAGCAATCAAATCTTTGATACTGTTGACCTCGCACTTCCTCATTACTCATACGAGTCACAGGCAGTTTGGGTTCCTGTGCCACTGTCAATAAAAGAAGCAGTAGTCAAGCAAAATTATGATTTCCGTGGAGGTCTGCATGCTGCTTCACATGCAATTTTACACGTAGTGCCTTTACATATCACATGCAACTTGTCTGACTTGGCTCCTGAATGTCCAAACCCTCATGATAGCCGATTTTACCCTGAAAGAATTCTAATATATGATCAACATCCCGGAGGATGTGGAATTTCAGTACAGGTTCAACCCTATTTTACAAAGTTCCTTGAAGCCGCACTAGAGCTTCTCACATGTTGCCGCTGCTCGGCGGAAGTGGGTTGCCCTAATTGTGTTCAGAGCTTTGTTTGCCATGAATATAACGAGGTTTTGCACAAGGATGCAGCCATCATGATCATTAAGGGTATTCTGGAGGCGGGAAACTAG 3657 0.4211 MSESNHKEIQIRALTGESITLPVTPTTTLHHLKLLLRHSFPPATTSPNFHLFFKGDKLRLQTQIASYPIQRDEFLVLIPFTKKEKEPSTTSDSLQPNVPQTTNASSSTSDLADSTWSSIKEDLSLLRDATENNASNSELGKEKPSETSTEGALGPEKQIELPYHFILNTLRESSDGPLGEHNCEVFAKVLESVNCLSELPFGHCKLLKRARPKGGGGGGGLKKRVSDGAICLCPPWLKIVVKAFAFVNIFSAFIYLQLRELTSILLEEALSELAKFGVNLGLGDIKNLSLLCPHLVCFRDDVEKTSFDDIIVVLNHSTGNDDLVEDNPKRVRKWLYVSKTVSTLKRRDSSFRKILGWAFEQLPYEFGDEMTVGISLEELLAAVKDDDFVKKEDKSKRVKRRKTTSKSDLNHIGCHDTKSLLAVEMIDHLRKGIGSEGQIVHIEDICARKAIYSKIHLDLSEKMRSALKCIGVSKFYSHQAESIQASLHGENVVVATMTSSGKSLCYNLPVLEVLSMNSSSCALYIFPTKALAQDQLRALLHMTKGFDNDFNIGIYDGDTSHSERMWLRDNSRLLITNPDMLHISILPHHQQFSRILSNLRFVVIDETHTYKGAFGSHTALILRRLKRLCSHVYGSVPSFVFSTATSANPREHSMELANLSTLELFQNDGSPSTRKLFVLWNPALRPKAIIKKPQFAMGTDELADESANFVRSSPIVDVSRLFAEMVQHGLRCIAFCKSRKLCELVLSYTREILHETAPWLVDSICAYRGGYMAEERRKIESSFFGGKVRGVAATNALELGIDVGEIDATLHLGFPGSIASLWQQAGRGGRRDKPSLAVYVAFGGPLDQYFMRHPNKLFGRPIECCHVDSQNKKILEQHLVCAANEYPLCVNYDEQYFGPCLESVIISLKARGYLSSVLSSDSSRMWNYIGPEKLPSHAVNIRAIENVRYSVIDQKKNGVLEEIEESKAFFQVYEGAVYMCQGRTYLVEKLDLSNKTAFCKEADLKYYTKTRDYTDIHVIGGNVAYPLKVETDMFPKSNARADVCKVTTTWFGFYRIWRGSNQIFDTVDLALPHYSYESQAVWVPVPLSIKEAVVKQNYDFRGGLHAASHAILHVVPLHITCNLSDLAPECPNPHDSRFYPERILIYDQHPGGCGISVQVQPYFTKFLEAALELLTCCRCSAEVGCPNCVQSFVCHEYNEVLHKDAAIMIIKGILEAGN 1218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02432 1218 Pfam MrfA Zn-binding domain 1107 1189 IPR018973 -
Phco7g02432 1218 SUPERFAMILY Ubiquitin-like 3 90 IPR029071 -
Phco7g02432 1218 MobiDBLite consensus disorder prediction 86 113 - -
Phco7g02432 1218 CDD SF2_C_Hrq 677 841 - -
Phco7g02432 1218 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 483 664 IPR014001 -
Phco7g02432 1218 ProSiteProfiles Ubiquitin domain profile. 7 78 IPR000626 GO:0005515
Phco7g02432 1218 Pfam Helicase conserved C-terminal domain 724 830 IPR001650 -
Phco7g02432 1218 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 522 851 IPR027417 -
Phco7g02432 1218 CDD DEXHc_Hrq1-like 475 656 - -
Phco7g02432 1218 MobiDBLite consensus disorder prediction 90 113 - -
Phco7g02432 1218 MobiDBLite consensus disorder prediction 131 154 - -
Phco7g02432 1218 Gene3D - 710 879 IPR027417 -
Phco7g02432 1218 Gene3D - 8 97 - -
Phco7g02432 1218 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 717 875 IPR001650 -
Phco7g02432 1218 SMART helicmild6 751 832 IPR001650 -
Phco7g02432 1218 SMART ultradead3 471 677 IPR014001 -
Phco7g02432 1218 Gene3D - 447 666 IPR027417 -
Phco7g02432 1218 PANTHER ATP-DEPENDENT HELICASE HRQ1 31 1217 - -
Phco7g02432 1218 Pfam DEAD/DEAH box helicase 477 646 IPR011545 GO:0003676|GO:0005524
Phco7g02432 1218 FunFam DEAD/DEAH box helicase 710 859 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02432 Phco-Chr7 42449414 42466435 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g02432 7 42449414 42466435 Phco7g02432 7 42449414 42466435 ECH