Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02368 ATGAGCTGGTCTGGTGGAGATTGGATGTGTGGTGCTTGCCAGCACATAAATTTCAAGAAGAGGGATTCATGCCAAAGTTGTGGATACCCCAAATTTGGAGGCCCTGATCCAACAGCTTACAGAGACAACTGGACTGAAGCCATGGCAGGGGACTGGTATTGCACTTCTATGAACTGTGGAGCTCACAACTATGCCAGCAGATCAAGCTGCTACAGATGTGGTGCATTGAAAGATGGTCATTCTTGTAGATTTGGGGGAAACATGGATGCCTGTGGAGGATATGCTTCTGATTGCAATCATCCCCTTGGCTGGAAAACTGGTGACTGGATTTGCACTAGAATTGGCTGTGGAGTCCATAACTATGCTAGCAGAACAGAATGTTTCAAGTGCAAAACACCCAGAAATTTTGAAGAAGTGAAGTTAAAAGCATACACTTTTAAGGAAAGAAAAAAGTTGAAGGAAGAACAAATAAGGCTATCAATAGAGAAAACTAAGGTTGAGATTAAAGCCAAAGTTTACAAGGAAGTTCCTGCAGCCAATTTGGTCACGGAGCTCCAAACCATCGAGCCATTGCCAGTGAAACCCCACTGTTTCATTTCCCGCTCAAGTGGCCCTAAGGGAACGCACCTCTTTCTCTTTCGGTGTTCTGCTTCCAGCTTTAGGGTTTCTCCGGTGAGTGGCGAAAAAATGGTGTCTCCGAAGCAGCTCCTAGGCACTATCGAATCAGCGCTTCTCGGCGCTTCGCCTCCAACTGCGGCGCAACGCGTAGAACTATTGCACGCTCTTCGCACTTCCCTCATCTCCTTCCGCTCCCTTCTCTCCTATCCACCCCCGAAGCCCTCTGATCGAAGCCAAGTTCAGTCAAAGTCCGTTAGGCTTCCTGATTCTCCTCCTATTTCACTTGACGACCAGGATGTGCACATTGCGCTCAAATTGAGTGATGATATCCACCTCAATGAAGTAGATTGTGTTCGTTTGCTTGTATCAGCAAATCAAGAGTGGGGCTTAATGGGAAGGGAACCACTGGAGATTTTACGGCTTGCAGCAGGACTCTGGTATACAGAGAGAAGGGATTTGATAACATCCCTCCATTTGCTCTTAAGGGCTGTGGTGCTAGATCAGGGTCTGCAAGATGATATATTGGTAGACATTCAGAAGTATCTAGAGGATCTTATCAGTTCTGGACTTAGACAACGGTTAATTTCTCTTATCAAGGAACTCAATAGAGAAGAACCTTCTGGTTTGGGTGGTCTTCAGTGTGAGCGCTTTATTCTCGATTCAAGAGGTTCTCTTGTGGAGAGGCAGGCAGTGGTCTCTAGAGAAAGACTTATTCTTGGGCATTGTCTTGTCCTTTCGAATCTAGTTGTTCGGACAAGTCCAAAGGATATAAAAGATATTTTTTCTGTTTTGAAAGATAATGCTTCTGAAGTTAGTGAGAGCAATACCATTGTCAAACATCAGATTACCTTTTGTCTTCTCTTTGCCCTTGTGATTGCATTTGTTTCGGATGGTTTGAGTACAGTGCCTGATAAAGCATCTGTCCTTTCTTCTAATGCTTCCTTCAGACAGGAATTTCACGAGCTTATAATGGCTGCTGGAAATGATCCAATTGTTGAGGGATTTGTTGGTGGCATAAGGCTTGCTTGGGCGGTACATTTGATGCTAATACAAGATGGTGTTGTAACAAGAGAGACTATTTCAAGTGGTTCATCAAACGAACTGGGTTATCTTAGTCAATGCATGGAAGTCATTTTCTCAAATAATGTTTTTCAGTTTTTACTTGATAAAGTTCTTCGTACTGCTGCCTACCAGACGGAAGATGAAGATATGGTCTACATGTACAATGCTTATCTGCACAAGCTGATTACATGCTTTTTGTCTAACTCTCTTGCAAGAGATAAGATAAAAGAAATGAAGGAGCGGACTATGAGTGTGCTTAGTCCATACCGAGTTGTTGGATCTCATGATTTTGCGCAGGACAGTAATTCAAGCTCTCTTCATGGCACTGAGATAGGACCTTTGCCATTTAATTCAATCTTGGACTTCGTGAGCGATATTTATCAGAAAGAACCAGAGCTTTTGTCTGGCAATGATGTGTTGTGGACATTTGTAAATTTTGCTGGAGAGGACCATACAAATTTCCAAACGCTTGTAGCATTCTTGAATATGCTGAGCACCTTGGCTTGCAGTCAAGAAGGTGCTTCGAAGGTTTATGAGTTGCTGCAAGGTAAAGCATTTCGCTCTATTGGATGGAGCACTTTATTTGAATGCTTAACAATTTACGACGAGAAATTCAAACAGTCTCTGCAAACTGCTGGAGCTATGTGGCCTGAAATTCAGGAGGGGGATGCTAAAGCGCTTGTGGCATACTTAAATGTTCTAATGAAGGTTGTAGAAAATGGGAATCCAACAGAAAGGAGAACCTGGTTTCCTGATATTGAACCACTATTTAAGCTTCTTAGTTACGAAAATGTGCCCCCTTATCTTAAGGGTGCTCTGAGGAATGCAATAGCCACATTTATTCAGGTTTCTCCAATACTGAAGGATAGCATCTGGACCTACCTTGAGCAATATGATTTGCCAGTAGTTGTTGGGCCTGATATCCAGGACGGTCCACAATCTATGGGTACTCAGGTTTATGATATGCAATTTGAATTGAATGAAATTGAAGCAAGGAGAGAACTATATCCTTCAACAATATCTTTCCTTAATTTGATAAATGCTCTTATTGCAGAAGAAAGTGATTTATCTGATAGAGGGCGAAGATTTATTGGAATCTTTAGGTTCATCTATGATCATGTTTTTGGGCCATTTCCTCAAAGAGCCTATGCAGATCCTTGTGAAAAGTGGCAGTTGGTTGGTGCCTGCCTTAAACATTTTCACATGGTATTGAGCATGTATGGCATCAAGGATGAGGACTATGAGGGTGTAGTTGATCAGTCTCGACTTACAGCAACCAAAGAATCATCACCACTTCAGACACAGCTCCCAGTTCTAGAGTTGCTCAAAGATTTCATGAGTGGAAAGACTGTCTTTCGGAACATTATGAGTATTCTTCTTCCAGGGGTGAATTCTGTTATTGCTGAACGCAGCAGTCAATTATATGGGAAGCTTCTGGAGAATGCAGTGCAGCTTTCCCTTGAAATTATAATCCTTGTTTTTGATAAAGATTTACTTCTTTCTGATTATTGGCTTCCTCTATACCAGCCATTGGATATTATACTCTCACATGATCATAATCAGATAGTAGCCCTGTTGGAGTATGTCGGATATGATTTTCAGCCAAAAGTTCAGCAATCCTCCATCAAAATCATGAGTATTTTAAGCTCCCGCATGGTTGGGCTTGTTCAACTATTGCTAAAATGCAATGCTTCAAACAGCTTGATAGAAGATTACGCAGCGTGCCTTGAGTCACGGTCAGAAGAGTTTCAAAGTCTTGAAAATAGCAGTGATGATCCTGGCATTCTTATTATGCAACTTCTAATTGACAATATCAGCCGGCCAGCTCCAAATATCGCCCATTTGCTACTTAAATTTGATCTAGATACATCTATTGAACGAACAGTTTTACAGCCTAAATTTTATTACAGTTGCTTGAAGGTTATTCTTGATATTCTGGAAGAGCTTTTGAAGCCAGATGTAAATGCATTACTTCACGAGTTTTGTTTGAAGCTCCTTTATGAATTGTGTGTAGATCCGGTGACATGTGTACCAACAATCGATCTGTTGTCAAATAAAAAGTACCAATTCTTTGTTAAGCACCTTGATACAATTGGGGTAGCTCCACTTCCTAAACGGAATAGCAACCAGTCACTTCGTAATAGTTCACTTCATCAGAGAGCGTGGCTCTTGAAACTCTTAGCTGTTGAACTACACACGGGTGATGTTACAATCTCCAATCATAGAGAAGCATGTCAAGCAATTCTCTCTTATCTTTTTGCACATGGTGTCAACGACTTTGGTGGAGGCCAAGCCATGTATCCACTTTTGCGTCATGATGCTTCTCAAAATGCTGCTCTAGGGGCTGTCAGCAAGAGTAAGGTTTTTGAATTGCTTGAAATCATCCAGTTTAGATGTCCTGATTCCACTACTCAGCTCTCAGATATTGTGGCTGGTATGAAATATGACTTGCCGGCCGAAGACATACTTGGAAATTCTGGAAACGATGGTGTGTACTATTATTCTGAGAGAGGTGACAGGCTAATTGACCTGGCTGCTTTCCACGACAAACTTTGGCAGAAATACAATTCAGCATACACCCAGGCAAGCAACTTTGGAAATGAAGTTGAGCTAAATAATGTTCGTGAGACAATTCAACAGTTGCTGAGGTGGGGATGGAAATACAATAAAAATCTTGAGGAACAAGCTGCACAACTTCATATGTTGACAGCCTGGTCTCAGATTGTTGAGGTGTCTGCATCTAGAAGATTAATAATGATTGAAGATCGGTCTGAAATTCTTTTTCAGGTCCTTGACGCATCTCTCAGTGCTTCTGCTTCTCAGGACTGTTCATTGAAGATGGCATTCATACTCTCACAGGTAGCATTGACATGCATGGCTAAACTGCGAGATGAAAGATTTTTGTTCCCTGGCAGTCTTAGTTCTGATAATATCACGTGCCTTGATCTCATTGTGGTGAAACAATTATCCAATGGTGCTTGTCTGACTATATTGTTTAAGCTTATTATGGCAATTCTTAGAAATGAATCTTCTGAAGCTCTTAGGAGACGCCAATATGCTTTCCTTCTTAGCTATTTCCAGTATTGTCAAAATGTGGTTGACCCTGATGTTCCAACAACAGTTCTTCAATTCCTTCTGCTCAATGAACAAGACAATGAGTATATTGATCTCCCAAAGATTGACAATGAACAAGCAGAACTGGCTCATGCAAACTTTTCAACTTTGAGGAAAGAAGCTCAGAGCATTTTGAATTTGGTCATAAAAGATGCCATGCATGGTAGCGAATCTGGAAAGACAATATCACTTTATGTTCTTGATGCATTGATTAGTATAGATCACGAGCGCTATTTTTTGAGCCAACTTCAAAGCAGGGGATTTTTAAGGTCATGCTTTACAGCCATAAGCAATGTTTGCAATCAGGATGGTGGCAGTCTTTCACTGGACTCTTTACAGAGGGCATGCACTTTTGAGGCTGAACTTGCTTTACTACTAAGAATCAGCCACAAGTATGGAAAGTCTGGAGCACAGGTACTGTTTTCCATGGGCATATTGGACAATCTTTCATCTGGCAGGGCAATGAATTTACAGGGAAGTTTAAGGTGGGTTGAGACAAGACTCAGAAGAGATGTGGCTGTGGATGTTGATAGACAACGGATGATTATAACTCCAGTCATGAGATTAGTGTTTTCACTAACTTCCTTGGTTGATACATCTGACTTTTTGGAGGTGAGGAATAAAATTGTTCGTGAGGTAATAGATTTTGTCAAAGGGCATCAATCACTCTTTGATCAGGTTCTCCGTCTAGACATTGCTGAAGCAGATGAACTAAGAATGGAGCAGATCAATTTAGTTGTTGGTATTCTTAGCAAGGTTTGGCCTTACGAAGAGAGTGACGAGTATGGTTTTGTTCAAGGGCTTTTTGGTATGATGCGTGCTCTTTTCTCACGTGATTCGAAGAGTCCTAGTTTTGCTCAATCAAGAGTATCACCTGAGAATCAGAGGAATTCAGAACTACGGCTGTTTAATTTGTGCTACAGCCTGAGCTCTTACTTATATTTTCTAGTCATAAAGAAATCCCTGAGATTGCAGCCTTCTGATGCCTCATCCAGTTACCCTACTTCTGTTGAACTTCAACAACCTACACTGAGCTTGCTTAATTTTCTTCTTTCTTCTGTTACAAATGCTCTTGAAAGGGCTGCTGAGGAGAAATCCATATTATTGAATAAGATCCGAGACATAAATGAACTGTCGAGGCAGGAAGTGGATGAAATCATAAATATGTGTGTTCGGCAGGACACTGTTTCATCTTCAGATAACATACAGAAAAGGAGATACATTGCAATGGTAGAAATGTGTCGAGTTGTTGCTAGTAGGGATCAGCTAATCATTTTGTTGCTTCCACTCTCTGAACATGTACTAAATATCATCCTAATCCATCTTCAAGAGAGTTCTGCTGCACTTGATTCAACCTTGACAACAAAAACAATTTCATATGGTACTAAGTATGATGCACAACAGGACGTTTCTTTATTATGTGGAAAGTTAGTCCCAACCCTGGAGCGACTTGAGTTGCTGAGTGAGGATAAAGTAGGGCACAATCTCAAAGTATTCCGCAGATTGGCAACTTCTGCCAAAGAGCTTGCAATTCAAAAACTGATTTAA 6342 0.412 MSWSGGDWMCGACQHINFKKRDSCQSCGYPKFGGPDPTAYRDNWTEAMAGDWYCTSMNCGAHNYASRSSCYRCGALKDGHSCRFGGNMDACGGYASDCNHPLGWKTGDWICTRIGCGVHNYASRTECFKCKTPRNFEEVKLKAYTFKERKKLKEEQIRLSIEKTKVEIKAKVYKEVPAANLVTELQTIEPLPVKPHCFISRSSGPKGTHLFLFRCSASSFRVSPVSGEKMVSPKQLLGTIESALLGASPPTAAQRVELLHALRTSLISFRSLLSYPPPKPSDRSQVQSKSVRLPDSPPISLDDQDVHIALKLSDDIHLNEVDCVRLLVSANQEWGLMGREPLEILRLAAGLWYTERRDLITSLHLLLRAVVLDQGLQDDILVDIQKYLEDLISSGLRQRLISLIKELNREEPSGLGGLQCERFILDSRGSLVERQAVVSRERLILGHCLVLSNLVVRTSPKDIKDIFSVLKDNASEVSESNTIVKHQITFCLLFALVIAFVSDGLSTVPDKASVLSSNASFRQEFHELIMAAGNDPIVEGFVGGIRLAWAVHLMLIQDGVVTRETISSGSSNELGYLSQCMEVIFSNNVFQFLLDKVLRTAAYQTEDEDMVYMYNAYLHKLITCFLSNSLARDKIKEMKERTMSVLSPYRVVGSHDFAQDSNSSSLHGTEIGPLPFNSILDFVSDIYQKEPELLSGNDVLWTFVNFAGEDHTNFQTLVAFLNMLSTLACSQEGASKVYELLQGKAFRSIGWSTLFECLTIYDEKFKQSLQTAGAMWPEIQEGDAKALVAYLNVLMKVVENGNPTERRTWFPDIEPLFKLLSYENVPPYLKGALRNAIATFIQVSPILKDSIWTYLEQYDLPVVVGPDIQDGPQSMGTQVYDMQFELNEIEARRELYPSTISFLNLINALIAEESDLSDRGRRFIGIFRFIYDHVFGPFPQRAYADPCEKWQLVGACLKHFHMVLSMYGIKDEDYEGVVDQSRLTATKESSPLQTQLPVLELLKDFMSGKTVFRNIMSILLPGVNSVIAERSSQLYGKLLENAVQLSLEIIILVFDKDLLLSDYWLPLYQPLDIILSHDHNQIVALLEYVGYDFQPKVQQSSIKIMSILSSRMVGLVQLLLKCNASNSLIEDYAACLESRSEEFQSLENSSDDPGILIMQLLIDNISRPAPNIAHLLLKFDLDTSIERTVLQPKFYYSCLKVILDILEELLKPDVNALLHEFCLKLLYELCVDPVTCVPTIDLLSNKKYQFFVKHLDTIGVAPLPKRNSNQSLRNSSLHQRAWLLKLLAVELHTGDVTISNHREACQAILSYLFAHGVNDFGGGQAMYPLLRHDASQNAALGAVSKSKVFELLEIIQFRCPDSTTQLSDIVAGMKYDLPAEDILGNSGNDGVYYYSERGDRLIDLAAFHDKLWQKYNSAYTQASNFGNEVELNNVRETIQQLLRWGWKYNKNLEEQAAQLHMLTAWSQIVEVSASRRLIMIEDRSEILFQVLDASLSASASQDCSLKMAFILSQVALTCMAKLRDERFLFPGSLSSDNITCLDLIVVKQLSNGACLTILFKLIMAILRNESSEALRRRQYAFLLSYFQYCQNVVDPDVPTTVLQFLLLNEQDNEYIDLPKIDNEQAELAHANFSTLRKEAQSILNLVIKDAMHGSESGKTISLYVLDALISIDHERYFLSQLQSRGFLRSCFTAISNVCNQDGGSLSLDSLQRACTFEAELALLLRISHKYGKSGAQVLFSMGILDNLSSGRAMNLQGSLRWVETRLRRDVAVDVDRQRMIITPVMRLVFSLTSLVDTSDFLEVRNKIVREVIDFVKGHQSLFDQVLRLDIAEADELRMEQINLVVGILSKVWPYEESDEYGFVQGLFGMMRALFSRDSKSPSFAQSRVSPENQRNSELRLFNLCYSLSSYLYFLVIKKSLRLQPSDASSSYPTSVELQQPTLSLLNFLLSSVTNALERAAEEKSILLNKIRDINELSRQEVDEIINMCVRQDTVSSSDNIQKRRYIAMVEMCRVVASRDQLIILLLPLSEHVLNIILIHLQESSAALDSTLTTKTISYGTKYDAQQDVSLLCGKLVPTLERLELLSEDKVGHNLKVFRRLATSAKELAIQKLI 2113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02368 2113 MobiDBLite consensus disorder prediction 278 294 - -
Phco7g02368 2113 PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP205 230 2043 IPR021827 GO:0005643
Phco7g02368 2113 SMART zf_4 6 30 IPR001876 -
Phco7g02368 2113 SMART zf_4 50 76 IPR001876 -
Phco7g02368 2113 SMART zf_4 107 133 IPR001876 -
Phco7g02368 2113 ProSiteProfiles Zinc finger RanBP2 type profile. 48 79 IPR001876 -
Phco7g02368 2113 SUPERFAMILY Ran binding protein zinc finger-like 48 80 IPR036443 -
Phco7g02368 2113 ProSitePatterns Zinc finger RanBP2-type signature. 52 73 IPR001876 -
Phco7g02368 2113 SUPERFAMILY Ran binding protein zinc finger-like 3 33 IPR036443 -
Phco7g02368 2113 Gene3D - 1 35 - -
Phco7g02368 2113 Gene3D - 43 79 - -
Phco7g02368 2113 Gene3D - 99 135 - -
Phco7g02368 2113 Pfam Zn-finger in Ran binding protein and others 49 77 IPR001876 -
Phco7g02368 2113 Pfam Zn-finger in Ran binding protein and others 105 134 IPR001876 -
Phco7g02368 2113 SUPERFAMILY Ran binding protein zinc finger-like 101 136 IPR036443 -
Phco7g02368 2113 ProSiteProfiles Zinc finger RanBP2 type profile. 105 136 IPR001876 -
Phco7g02368 2113 ProSitePatterns Zinc finger RanBP2-type signature. 109 130 IPR001876 -
Phco7g02368 2113 Pfam Nuclear pore complex scaffold, nucleoporins 186/192/205 254 1849 IPR021827 GO:0005643
Phco7g02368 2113 Coils Coil 1956 1976 - -
Phco7g02368 2113 ProSiteProfiles Zinc finger RanBP2 type profile. 4 33 IPR001876 -
Phco7g02368 2113 MobiDBLite consensus disorder prediction 277 297 - -
Phco7g02368 2113 ProSitePatterns Zinc finger RanBP2-type signature. 8 27 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02368 Phco-Chr7 41390668 41432262 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g02368 7 41390668 41432262 Phco8g01550 8 15950679 15951696 PCT