Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02316 ATGAATAAAACAAAAAAAGAATGGAAGTCTCTGGGAGCTTCTTCTGCATCTTCAAGGAAGCTCTCAAACTTTCAAGAAAAGTCTTCTCAACTTCATAAATTGTCTACGGTTCCTTTCTTCCTCACTTCATACATTGATCACCAAAAACTCTTTACTCCAAAACTCAAACCAATTCAAATTCTGTTCGTTCGTTCTTTCACTGTTCGTCTCTGCATTCCCAGAAATCAAAGTTTTCATCCAACGCGCGATAAGAAGGTACGCAAAGTGATGAATCCCGAGAAGTTTACGCACAAGACCAATGAGGCTCTCGTCAGTGCTCACGAAACGGCGGTGAGCAATGGCCACGCGCAGTTCACTCCTCTCCACCTGGCCTCCTCTCTACTCTCCGACAACGGTGGAATCTTCTTCCAAGCGTTATCCAACACGGGCGGCGAGGAATCGGCGCGCGCGGCGGAGAGAGTGTTCAGCCAAGCGCTGAAGAAACTTCCGTCGCAAACTCCTCCTCCCGACGAGGTTCCGGCAAGCACGAACCTCATGAAAGCCATCCGCAGAGCTCAGACGCTCCAGAAGACGCGTGGCGATACGCACCTGGCCGTCGACCAGCTCATCCTCGGCCTTCTGGAGGATTCTCAGATCGCGGAGTTGCTCAAGGAAGCCGGCGTGGCGGCATCGAAGGTCAAATCGGAAGTCGAGAAGCTTCGCGGCAAGGAAGGGAAGAAAGTGGAATGCGCCACCGGTGACACAACCTTTCAGGCTTTGCATACCTATGGAAGAGACCTTGTGGAACAAGCTGGGAAGCTCGACCCGGTTATTGGAAGGGATGAAGAAATACGAAGGGTTGTGAGGATTTTATCTAGAAGGACGAAAAATAACCCGGTTTTAATTGGTGAACCGGGTGTGGGAAAAACTGCTGTGGTTGAAGGGTTGGCTCAGAGGATCGTTAAAGGGGATGTTCCTAGTAATCTTGCTGATGTTAGGCTCATTGCGCTGGACATGGGTGCGTTGGTTGCGGGCGCGAAGTACAGAGGGGAGTTTGAGGAGCGGTTGAAGGCAGTTTTGAAGGAGGTGGAAGAGGCTGAGGGGAAGGTTATTTTGTTCATTGATGAGATTCATTTGGTTCTTGGTGCTGGGAAAGCTGAGGGTTCCATGGATGCTGCTAATTTGTTTAAGCCTATGCTTGCGCGGGGTCAGTTGAGGTGCATTGGTGCCACCACCCTTGACGAGTATAGGAAGTATGTGGAGAAGGATGCAGCCTTTGAGAGAAGGTTTCAGCAGGTGTATGTGGCGGAACCGAGTGTCGTTGATACTGTCAGTATACTTCGTGGTTTGAAAGAAAAATACGAAGGTCACCATGGTGTAAGGATTCTTGATCGTGCTTTGGTTGTTGCGGCTCAATTGTCTAGTCGCTACATCACTGGTCGTCATCTTCCTGACAAGGCAATTGATTTAGTTGATGAGGCTTGTGCGAATGTGAGAGTTCAACTTGATAGCCAGCCAGAGGAAATTGACAACCTTGAAAGGAAGAGAATGCAGTTAGAAGTGGAACTTCATGCTCTGGAGAAAGAGAAAGACAAAGCCAGCAAAGCTCGTTTAGTAGAAGTGCGGACAGAGCTGGATGACCTGAGAGACAAGCTGCAACCTTTGATGATGAAGTACAGGAAGGAGAAGAATAGGATTGATGAGATTCGACGACTAAAGCAAAAAAGAGAAGAGCTGAACTTTGCTCTTCTAGAGGCTGAGAGGCGATATGATCTTGCCAGAGCTGCGGATTTGCGGTATGGGGCGATTCAGGAGGTGGAATCTGCAATTCAAGAGCTTGAAGGGAACACTGACGGGAATGTAATGTTGACAGAAACTGTTGGACCTGAACACATTGCGGAGGTCGTGAGTCGCTGGACTGGCATACCAGTGACGAGACTTGGGCAAAATGATAAAGAAAGGTTGATTGGTCTTGCTGACAGATTGCACAATAGGGTTGTAGGGCAAGACCAAGCAGTTAGTTGTGTAGCAGAGGCTGTGCTGAGATCAAGAGCCGGGCTTGGGAGACCTCAACAACCAACGGGCTCCTTCCTGTTCTTGGGTCCAACTGGTGTTGGCAAGACCGAGCTTGCAAAGGCCCTTGCCGAGCAACTTTTTGACGATGAAAATCAGTTGGTGAGAATTGACATGTCTGAATACATGGAGCAACATTCTGTGTCACGCTTGATTGGTGCACCACCTGGCTATGTTGGACATGAAGAAGGTGGTCAGCTAACTGAAGCTGTAAGGCGAAGACCTTACAGTGTGGTACTGTTTGATGAAGTAGAAAAGGCACACATATCTGTGTTTAACACTCTCCTTCAAGTCTTGGATGATGGAAGATTAACGGATGGCCAAGGCCGCACTGTGGACTTTAGAAACACAGTCATTATCATGACCTCTAACCTTGGCGCAGAGCACCTCCTTACTGGACTTTCAGGAAAATCTTCAATGCAAGTGGCTCGTGATAAAGTAATGCAGGAGGTAAGAAGACATTTTAGGCCAGAATTGTTGAACCGGCTTGATGAAATTGTCGTATTTGATCCTCTTTCGCACGAGCAACTAAGGAAGGTTGCAAGGTTACTAATGAAGGATGTTGCTTCTCGTCTTGCTGAGAGGGGAATTGCAATGGCAGTGACTGATGCAGCTCTTGACTATATCCTTAGTGAGAGCTATGATCCGGTTTATGGTGCCAGACCAATTAGGAGGTGGCTTGAGCGGAAGGTTGTGACGGAGCTTTCTAGAATGCTTGTGAAGGAAGAAATTGATGAGAACTCAACTGTTTACATTGATGCTGGTCCTGAGGGCAGCGAGCTAATTTACCGGGTGGAAAACAATGGAGGGATGGTTAATGCTGTAACTGGTCAGAAGTCTGATATTCTGATTCAGATCCCTAATGGACCACTACCAAGATCTGATGCTGCCCAGGCAGTGAAGAAGTTGAAGGTTGAGCAAATGGATGAGGATGAAGATGGTGAAATGGAGATGTGA 3009 0.4792 MNKTKKEWKSLGASSASSRKLSNFQEKSSQLHKLSTVPFFLTSYIDHQKLFTPKLKPIQILFVRSFTVRLCIPRNQSFHPTRDKKVRKVMNPEKFTHKTNEALVSAHETAVSNGHAQFTPLHLASSLLSDNGGIFFQALSNTGGEESARAAERVFSQALKKLPSQTPPPDEVPASTNLMKAIRRAQTLQKTRGDTHLAVDQLILGLLEDSQIAELLKEAGVAASKVKSEVEKLRGKEGKKVECATGDTTFQALHTYGRDLVEQAGKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVKGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGKAEGSMDAANLFKPMLARGQLRCIGATTLDEYRKYVEKDAAFERRFQQVYVAEPSVVDTVSILRGLKEKYEGHHGVRILDRALVVAAQLSSRYITGRHLPDKAIDLVDEACANVRVQLDSQPEEIDNLERKRMQLEVELHALEKEKDKASKARLVEVRTELDDLRDKLQPLMMKYRKEKNRIDEIRRLKQKREELNFALLEAERRYDLARAADLRYGAIQEVESAIQELEGNTDGNVMLTETVGPEHIAEVVSRWTGIPVTRLGQNDKERLIGLADRLHNRVVGQDQAVSCVAEAVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENQLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLTGLSGKSSMQVARDKVMQEVRRHFRPELLNRLDEIVVFDPLSHEQLRKVARLLMKDVASRLAERGIAMAVTDAALDYILSESYDPVYGARPIRRWLERKVVTELSRMLVKEEIDENSTVYIDAGPEGSELIYRVENNGGMVNAVTGQKSDILIQIPNGPLPRSDAAQAVKKLKVEQMDEDEDGEMEM 1002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02316 1002 Pfam C-terminal, D2-small domain, of ClpB protein 856 936 IPR019489 -
Phco7g02316 1002 Gene3D - 240 432 IPR027417 -
Phco7g02316 1002 Gene3D - 91 237 IPR036628 -
Phco7g02316 1002 CDD AAA 271 426 - -
Phco7g02316 1002 Pfam AAA domain (Cdc48 subfamily) 686 850 IPR003959 GO:0005524|GO:0016887
Phco7g02316 1002 ProSitePatterns Chaperonins clpA/B signature 1. 384 396 IPR018368 GO:0005524
Phco7g02316 1002 Gene3D - 639 855 IPR027417 -
Phco7g02316 1002 SUPERFAMILY Double Clp-N motif 93 231 IPR036628 -
Phco7g02316 1002 ProSitePatterns Chaperonins clpA/B signature 2. 720 738 IPR028299 -
Phco7g02316 1002 Gene3D - 433 633 IPR027417 -
Phco7g02316 1002 ProSiteProfiles Clp repeat (R) domain profile. 92 236 IPR004176 -
Phco7g02316 1002 FunFam ATP-dependent Clp protease subunit 639 854 - -
Phco7g02316 1002 Coils Coil 552 582 - -
Phco7g02316 1002 PANTHER ATP-DEPENDENT CLP PROTEASE 96 953 - -
Phco7g02316 1002 Pfam Clp amino terminal domain, pathogenicity island component 106 145 IPR004176 -
Phco7g02316 1002 Pfam Clp amino terminal domain, pathogenicity island component 185 235 IPR004176 -
Phco7g02316 1002 Pfam ATPase family associated with various cellular activities (AAA) 293 406 IPR003959 GO:0005524|GO:0016887
Phco7g02316 1002 Coils Coil 342 362 - -
Phco7g02316 1002 FunFam Chaperone clpB 1, putative 241 432 - -
Phco7g02316 1002 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 635 937 IPR027417 -
Phco7g02316 1002 Pfam AAA lid domain 433 532 IPR041546 -
Phco7g02316 1002 CDD RecA-like_ClpB_Hsp104-like 647 853 - -
Phco7g02316 1002 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 797 811 IPR001270 GO:0005524
Phco7g02316 1002 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 764 782 IPR001270 GO:0005524
Phco7g02316 1002 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 690 708 IPR001270 GO:0005524
Phco7g02316 1002 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 735 753 IPR001270 GO:0005524
Phco7g02316 1002 SMART AAA_5 288 433 IPR003593 GO:0016887
Phco7g02316 1002 SMART AAA_5 686 857 IPR003593 GO:0016887
Phco7g02316 1002 Coils Coil 495 529 - -
Phco7g02316 1002 SMART ClpB_D2_small_2 856 947 IPR019489 -
Phco7g02316 1002 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 250 634 IPR027417 -
Phco7g02316 1002 Gene3D - 856 950 - -
Phco7g02316 1002 FunFam ATP-dependent chaperone ClpB 433 633 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02316 Phco-Chr7 40728457 40733879 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g02316 7 40728457 40733879 Phco7g02316 7 40728457 40733879 ECH