Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02312 ATGTTGGTTCAGATTCCTCGTCTTACCAACTCTCTCAGAGAACCTTTCGATGTCGACCAGTATTATCTTCATCGCAAAACCATTCTCCATAAACAAAAACCTCGCAATCCTGCAAGTTCTCTTGATGAATCGGAACTGGCGCGGAAGATTGTTCACGGGTGGGAAGAAGCTTCTTCAGAAGTGCGACAGGCCTACAAGCAGTTTATAGGAGCAGTGGTGGACATGGTTGACGGTGAAATGCGCTCCGAGGAGTTCCATGAGGTGGCACTGGCTGTGTACCGGCTATTTGGCACTCCAATGGAGGAGGGCTACATTGATAAAATAATTTCAGAAAAAAAGTTTGAATTACAAAAACTTATTGGACACCTGCTTGTTGATGCCAAGTTGAGGCAAGTTGCATCACTAGCACAGAGGCTTTTAAATTTGCAGCCACTCAATAAAATGTCTGCCATTTCTTCTGAAAGAAATTTAGACGCTGATGAGGATTTAGAATTTGGAGCTAATTTGGTTTTTCAAGCACCTGCCCGTTTCTTGGTTGATGTATCCTTAGATGATGGAGATATGATTGATTTTGAAAGCACTGTTCCATCAGAATTTCACAATGAACAGTATGGTCATACCAGTACAGCAGATCATTCTATTGCCGATGGGGATAAGTTCAACCTGGCTTGGATAAGAGATGCATGTGATAAAATAGTTAGGAATTGTAATTCACAGCTATCCCGAGATGAATTGGCAATGGCCATTTGCCGGGTTCTTAATTCAGAAAAGCCTGGTGAAGAGATAGCTGGAGATCTGTTGGATCTGGTTGGTGATAGTGCATTTGAAACTGTGCAAATTATTTTATTGCATCGAAAGGAGATTGTTGATTCTATTCATCATGGCTTATTGATATTGAAGTCTGATAAAAATGCTTCAAATGCTCAGTCTCGCATGCCTAGTTATGGAACACAGGTGACTGTTCAAACAGAATCAGGAAAGCAAATTGACAAGCTTCGACGCAAGGAGGAAAAACGAAATAGACGTGGAGTAGAACATGCCGGTGATGGTGACTTGTCTATTCTGGATTTCTCATCTTTACTTCAAGCAAGTGAGAGGAAAAATTTGTTTGATGAAATGATTGGGTCTGGAGATAGGTCCGAGTCAATAGCTGTTACTGCTCTTCCTGAAGGAACTGTAAGGAAACATTTTAAGGGGTATGAAGAGGTTATTATTCCCCCAAAACCAACTGCACCGTTGAAACCTGGAGAAAAGCTGATTGAGATCAGGGAGTTAGATGAGTTTGCACAAGCTGCATTCCGTGGTTACAAATCACTTAACCGAATCCAGAGCAGGATATTTCCAACTGTTTATGGAACTAATGAGAATATTCTAGTGTGTGCTCCCACTGGAGCTGGCAAAACTAACATAGCTATGATTTCAATTCTACACGAGATTGGACAGCACTTCAAGGATGGTTACTTGCATAAAGATGAATTTAAGATAGTTTATGTCGCTCCAATGAAGGCTTTGGCTGCAGAAGTGACATCAACATTCAGCCAACGTTTATCTCCTTTGAATATGATTGTTAGAGAGCTTACTGGAGATATGCAGCTCTCTAAAAATGAACTCGAAGAAACTCAGATGATAGTGACAACACCTGAGAAATGGGATGTCATTACACGTAAGAGCAGTGACATGTCGCTGTCAATGCTGGTAAAGCTGTTAATTATTGATGAAGTCCATCTACTCAATGATGATAGAGGTCCTGTGATAGAGGCTCTAGTTGCCAGGACCCTGCGGCAGGTGGAATCTACTCAGACAATGATACGCATTGTGGGCCTTTCTGCCACTCTTCCCAATTACCTAGAGGTTGCACAATTTCTCAGGGTAAATCCAGACACAGGCCTTTTCTTCTTTGATTCTACTTACCGTCCAGTGCCTCTTGCACAACAGTATATTGGAATTAGTGAGCCAAACTTTGCAGCTCGTAATGAAATGTTGAATGATATATGCTATACAAAGATTGCTGATTCTGTAAGGCAAGGCCACCAGGCAATGGTATTTGTCCACTCTCGAAAGGACACTGTGAAGACGGCTAATAAACTGGTTGAACTAGCGAGGAGGTATGAGGATTTGGAACTTTTTAGTAATAATACACATCCACAATATACCTTTATGAAGAAAGAAGTCATTAAATCCAGAAACAAAGATCTTGTTGAACTTTTTGAGTATGGTGTGGGTGTGCATCATGCTGGGATGTTACGAGCAGATAGAGGACTTACTGAGCGACTTTTCGCTGATGGACTTCTAAAGGTTCTTGTCTGTACAGCAACTTTGGCGTGGGGTGTCAACCTACCTGCACACACAGTTGTCATCAAGGGTACCCAATTATATGATCCAAAAGCTGGTGGGTGGCGAGACCTTGGTATGCTTGATGTTATGCAGATATTTGGGCGAGCTGGGAGACCTCAGTTTGACAAAAGTGGTGAAGGTATTATAATTACATCTCATGACAAACTAGCTTATTATCTGCGACTGTTGACAAGCCAACTCCCAATTGAAAGCCAGTTTATTAGCTCCTTGAAAGATAATTTAAATGCAGAGGTGGCATTGGGTACTGTTACTAATGTTAAGGAAGCCTGTGCTTGGCTGGGCTATACTTATCTTTTCATAAGGATGAGGATGAATCCTTTAGCCTATGGTATTGGGTGGGATGAGGTGATGGCGGATCCTGCTCTTAGTTCTAAGCAGAGGTCTCTTGTAATTGATGCTGCACGTGCCCTTGATAAAGCAAAAATGATGCGCTTTGATGAGAAAAGTGGCAATTTTTATTGTACTGAGCTTGGTCGCATTGCAAGCCATTTTTACATTCAATATTCGAGTGTTGAAACATACAATGAAATGCTGAGACGCCACATGAATGACAGTGAGGTGATTAACATGATTGCACATTCTTCTGAATTTGAGAATATTGCTGTTCGAGAAGAAGAACAAAATGAGCTAGAGATGTTGGCACGCTCATCATGTCCATTAGAAATTAATGGTGGTCCTTCCAATAAACATGGAAAGATTTCCATCTTGATTCAGTTGTACATATCTCGAGGTTCTATAGATTCTTTTTCTTTGATATCTGATGCTGCATATATTAGTGCAAGCTTGGCTCGAATAACACGGGCATTATTTGAAATTTGCTTACGAAGAGGTTGGTGTGAGATGTCTTTGTTCATGTTGGAGTATAGCAAAGCTGTGGATCGTCAAGTTTGGCCACATCAACATCCTCTTAGACAATTTGACAAGGACCTTTCTGCAGAAATATTGCGGAAGCTTGAAGAACGTGGAGCTGACCTAGATCGCCTGTTTGAGATGGAGGAGAAAGACATTGGGGCATTAATTCGGTATGCACCAGGAGGAAGGTTGGTCAAGCAAAACTTAGGGTATTTCCCATCACTTCAATTATCAGCAACTGTGAGTCCAATTACCAGAACTGTATTGAAGGTTGATTTGGTCATTACGCCTGTTTTCATTTGGAAAGATCGTTTTCATGGTACTGCTCAACGTTGGTGGATTTTGGTAGAGGATTCTGAGAATGATCACATCTACCACTCGGAACTCTTTACGTTGACAAAGAGGATGTCTAGGGGCGAACCTTACAAGCTTTCCTTCACTGTACCTATATTTGAACCACATCCACCACAATATTACATCCATGCTGTTTCTGATTCGTGGCTTCATGCTGAGGCATTCTACACTATTACTTTTCACAATTTACCATTGCCAGAGGCTCGGACTTCTCACACAGAACTCCTTGATTTAAAACCTCTTCCTGTGTCTTCTCTTGGCAACAATTCTTATGAAGCATTGTATAAATTTTCACATTTTAATCCTATACAAACACAGACTTTTCATGCCTTGTATCACACGGACAATAATGTTCTGTTAGGAGCTCCAACTGGAAGTGGAAAAACTATATCTGCTGAGCTTGCTATGCTTCGTCTTTTCAATACTCAGCCTGATATGAAGGTTATTTACATAGCTCCTTTGAAGGCTATTGTTAGGGAAAGAATGAGTGATTGGCAAAAGCGTCTTGTCTCTCAACTAAAGAAAAAAATGGTTGAAATGACTGGAGACTATACTCCTGATTTGATGGCTCTTTTGTCAGCTGATATCATCATATCTACTCCTGAAAAGTGGGATGGGATTAGTCGTAATTGGCATACCCGTAGTTATGTCACAAAGGTTGGACTTATGATTTTGGATGAGATTCACTTATTGGGAGCAGATCGTGGGCCAATCCTTGAGGTTATTGTTTCTAGGATGAGGTATATATCATCCCAAACAGAGCGAGCAGTACGATTTATTGGCCTTTCTACAGCACTAGCTAATGCTGGTGATCTAGCTGACTGGTTAGGCGTTGAGGAAATTGGACTCTTCAATTTCAAGCCAAGTGTGAGGCCTGTACCTCTGGAAGTTCATATTCAGGGTTATCCTGGAAAGTATTATTGCCCAAGGATGAACAGCATGAATAAACCAGCATATGCTGCAATATGCACTCATTCACCTGCAAAACCAGTTCTTATATTTGTCTCATCCCGACGCCAGACAAGACTTACTGCACTTGACCTGATTCAGTTTGCCGCATCAGATGAACAATCAAGACAATTCCTTAGTTTGCCTGAGGAAACCCTGCAGATGGTTCTGTCTCAAGTCTCAGACCAAAACCTTAGGCATACTTTACAATTTGGCATTGGATTACATCATGCAGGACTGAATGACAAAGACAGATCACTGGTTGAGGAACTCTTTGGAAACAACAAAATTCAGATATTGGTTTGTACCAGCACATTGGCTTGGGGTGTGAATCTTCCAGCTCATCTGGTGATTATCAAGGGGACAGAATACTATGATGGAAAAGCAAAGAGGTATGTTGATTTTCCAATCACCGATATTTTGCAAATGATGGGTCGTGCTGGACGCCCTCAGTTTGATCAACATGGGAAAGCTGTGATTCTTGTTCATGAACCCAAGAAGAGCTTCTATAAAAAGTTCTTGTATGAACCCTTCCCTGTTGAGAGTAGTTTGAGGGAACATTTGCACGATCACATTAACGCTGAAATTATTTCTGGAACCATTTGTCATAAACAAGATGCAGTGCATTATCTTACATGGACTTACTTATTTCGTAGACTGATGGTAAATCCTGCTTACTATGGACTGGAGAATGCTGACACCGAATTCCTAAATTCATATTTGTCCAGCTTAGTGCAGAACACATTTGAGGATTTGGAAGACAGCGGATGCATAAAGATGGATGAAGAGAAGGTGGAGTCCATGATGTTGGGTTCAATTGCATCTCAGTATTACCTCAGCTACATGACTGTATCAATGTTTGGGTCAAACATAGGTCCAGATACATCACTTGAAGTCTTTCTGCATATCTTATCTGCTGCTTCTGAATTTGATGAACTACCTGTGCGTCATAATGAGGAAAAATACAATGAAGCACTGTCTGAGAAAGTTAAATATCCAGTGGATAAGAATCGTCTAGACGACCCTCACATCAAAGCAAATCTTCTATTTCAGGCTCATTTTTCTCAATTGGAGTTACCAATTAGTGACTATGTCACAGACTTGAAATCCGTATTAGATCAGAGTATACGCATAATTCAGGCCATGATTGATATATGTGCAAACAGTGGGTGGCTTTCTAGCTCAATTACTTGCATGCGTCTTCTGCAAATGGTCATGCAGGGCTTGTGGTTTGATAAGGACACTTCCTTATGGATGCTGCCGTGCATGAATACAGATCTGATAAGTTTACTTAACCAAAGAGGAATTTCTAGTGTACAGGAATTACTAGACATTCCCAAAACAGCATTGCAGACTGTAACTGCAAATTTCCCAGCTTCAAGATTGTACCAGGATCTACAACATTTCCCTCATATTAAAATGAAATTAAAGGTTCAGAGGAGGGACACTGATGGTGAGAGGTCTGACATAATAAATATCAGATTAGAGAAGATCAATTCTAGACGACACTCCTCTAGAGCATTTGTTCCTCGATTTCCAAAGATAAAAGAGGAACAGTGGTGGTTGGTTCTTGCTAATACCTCTACATCTGAGCTATATGCTTTGAAAAGAGTTTCTTTTTCAGGTCACTTAACTACCTCAATGAAGTTACCTCCGACTCCAGCTAATCTTCAGGGCGTAAAACTGATTTTAGTCTCCGATTGTTACATTGGATTTGAACAAGAACACTCCATTGAAAAGCTTGGTGTATGA 6261 0.4084 MLVQIPRLTNSLREPFDVDQYYLHRKTILHKQKPRNPASSLDESELARKIVHGWEEASSEVRQAYKQFIGAVVDMVDGEMRSEEFHEVALAVYRLFGTPMEEGYIDKIISEKKFELQKLIGHLLVDAKLRQVASLAQRLLNLQPLNKMSAISSERNLDADEDLEFGANLVFQAPARFLVDVSLDDGDMIDFESTVPSEFHNEQYGHTSTADHSIADGDKFNLAWIRDACDKIVRNCNSQLSRDELAMAICRVLNSEKPGEEIAGDLLDLVGDSAFETVQIILLHRKEIVDSIHHGLLILKSDKNASNAQSRMPSYGTQVTVQTESGKQIDKLRRKEEKRNRRGVEHAGDGDLSILDFSSLLQASERKNLFDEMIGSGDRSESIAVTALPEGTVRKHFKGYEEVIIPPKPTAPLKPGEKLIEIRELDEFAQAAFRGYKSLNRIQSRIFPTVYGTNENILVCAPTGAGKTNIAMISILHEIGQHFKDGYLHKDEFKIVYVAPMKALAAEVTSTFSQRLSPLNMIVRELTGDMQLSKNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQVESTQTMIRIVGLSATLPNYLEVAQFLRVNPDTGLFFFDSTYRPVPLAQQYIGISEPNFAARNEMLNDICYTKIADSVRQGHQAMVFVHSRKDTVKTANKLVELARRYEDLELFSNNTHPQYTFMKKEVIKSRNKDLVELFEYGVGVHHAGMLRADRGLTERLFADGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHDKLAYYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLFIRMRMNPLAYGIGWDEVMADPALSSKQRSLVIDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRRHMNDSEVINMIAHSSEFENIAVREEEQNELEMLARSSCPLEINGGPSNKHGKISILIQLYISRGSIDSFSLISDAAYISASLARITRALFEICLRRGWCEMSLFMLEYSKAVDRQVWPHQHPLRQFDKDLSAEILRKLEERGADLDRLFEMEEKDIGALIRYAPGGRLVKQNLGYFPSLQLSATVSPITRTVLKVDLVITPVFIWKDRFHGTAQRWWILVEDSENDHIYHSELFTLTKRMSRGEPYKLSFTVPIFEPHPPQYYIHAVSDSWLHAEAFYTITFHNLPLPEARTSHTELLDLKPLPVSSLGNNSYEALYKFSHFNPIQTQTFHALYHTDNNVLLGAPTGSGKTISAELAMLRLFNTQPDMKVIYIAPLKAIVRERMSDWQKRLVSQLKKKMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHTRSYVTKVGLMILDEIHLLGADRGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLADWLGVEEIGLFNFKPSVRPVPLEVHIQGYPGKYYCPRMNSMNKPAYAAICTHSPAKPVLIFVSSRRQTRLTALDLIQFAASDEQSRQFLSLPEETLQMVLSQVSDQNLRHTLQFGIGLHHAGLNDKDRSLVEELFGNNKIQILVCTSTLAWGVNLPAHLVIIKGTEYYDGKAKRYVDFPITDILQMMGRAGRPQFDQHGKAVILVHEPKKSFYKKFLYEPFPVESSLREHLHDHINAEIISGTICHKQDAVHYLTWTYLFRRLMVNPAYYGLENADTEFLNSYLSSLVQNTFEDLEDSGCIKMDEEKVESMMLGSIASQYYLSYMTVSMFGSNIGPDTSLEVFLHILSAASEFDELPVRHNEEKYNEALSEKVKYPVDKNRLDDPHIKANLLFQAHFSQLELPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMRLLQMVMQGLWFDKDTSLWMLPCMNTDLISLLNQRGISSVQELLDIPKTALQTVTANFPASRLYQDLQHFPHIKMKLKVQRRDTDGERSDIINIRLEKINSRRHSSRAFVPRFPKIKEEQWWLVLANTSTSELYALKRVSFSGHLTTSMKLPPTPANLQGVKLILVSDCYIGFEQEHSIEKLGV 2086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02312 2086 FunFam RNA helicase, activating signal cointegrator 1 1141 1250 - -
Phco7g02312 2086 Pfam Sec63 Brl domain 939 1245 IPR004179 -
Phco7g02312 2086 SMART Sec63_2 939 1247 IPR004179 -
Phco7g02312 2086 SMART Sec63_2 1770 2083 IPR004179 -
Phco7g02312 2086 CDD SF2_C_Ski2 638 829 - -
Phco7g02312 2086 FunFam Activating signal cointegrator 1 complex subunit 3 1479 1683 - -
Phco7g02312 2086 Gene3D C2 domain 1973 2083 IPR035892 -
Phco7g02312 2086 FunFam U5 small nuclear ribonucleoprotein helicase 848 939 - -
Phco7g02312 2086 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1173 1471 IPR027417 -
Phco7g02312 2086 Pfam DEAD/DEAH box helicase 1289 1453 IPR011545 GO:0003676|GO:0005524
Phco7g02312 2086 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 633 846 IPR027417 -
Phco7g02312 2086 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 665 863 IPR001650 -
Phco7g02312 2086 Gene3D - 848 938 IPR036388 -
Phco7g02312 2086 FunFam U5 small nuclear ribonucleoprotein helicase 940 1082 - -
Phco7g02312 2086 FunFam U5 small nuclear ribonucleoprotein helicase 1083 1139 - -
Phco7g02312 2086 FunFam RNA helicase, activating signal cointegrator 1 427 638 - -
Phco7g02312 2086 Gene3D C2 domain 1141 1250 IPR035892 -
Phco7g02312 2086 SUPERFAMILY "Winged helix" DNA-binding domain 1682 1782 IPR036390 -
Phco7g02312 2086 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 388 623 IPR027417 -
Phco7g02312 2086 Gene3D - 1084 1138 - -
Phco7g02312 2086 SUPERFAMILY Sec63 N-terminal domain-like 1803 1956 - -
Phco7g02312 2086 Pfam Sec63 Brl domain 1771 2081 IPR004179 -
Phco7g02312 2086 Pfam Helicase conserved C-terminal domain 1567 1652 IPR001650 -
Phco7g02312 2086 Pfam Helicase conserved C-terminal domain 671 816 IPR001650 -
Phco7g02312 2086 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1473 1682 IPR027417 -
Phco7g02312 2086 Pfam DEAD/DEAH box helicase 441 614 IPR011545 GO:0003676|GO:0005524
Phco7g02312 2086 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1296 1471 IPR014001 -
Phco7g02312 2086 CDD SF2_C_Ski2 1478 1666 - -
Phco7g02312 2086 Gene3D - 940 1082 - -
Phco7g02312 2086 Gene3D - 639 841 IPR027417 -
Phco7g02312 2086 MobiDBLite consensus disorder prediction 307 326 - -
Phco7g02312 2086 SMART helicmild6 726 818 IPR001650 -
Phco7g02312 2086 SMART helicmild6 1566 1654 IPR001650 -
Phco7g02312 2086 FunFam Activating signal cointegrator 1 complex subunit 1251 1478 - -
Phco7g02312 2086 PANTHER DNA POLYMERASE THETA, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G05260)-RELATED 314 1157 - -
Phco7g02312 2086 CDD DEXHc_ASCC3_2 1286 1474 - -
Phco7g02312 2086 FunFam U5 small nuclear ribonucleoprotein helicase 1684 1777 - -
Phco7g02312 2086 SUPERFAMILY E set domains 1992 2081 IPR014756 -
Phco7g02312 2086 Gene3D - 1252 1478 IPR027417 -
Phco7g02312 2086 Gene3D - 1479 1683 IPR027417 -
Phco7g02312 2086 MobiDBLite consensus disorder prediction 307 346 - -
Phco7g02312 2086 FunFam U5 small nuclear ribonucleoprotein helicase 639 841 - -
Phco7g02312 2086 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1544 1711 IPR001650 -
Phco7g02312 2086 FunFam DExH-box ATP-dependent RNA helicase DExH14 1973 2083 - -
Phco7g02312 2086 MobiDBLite consensus disorder prediction 327 346 - -
Phco7g02312 2086 SUPERFAMILY "Winged helix" DNA-binding domain 846 951 IPR036390 -
Phco7g02312 2086 CDD DEXHc_ASCC3_1 438 634 - -
Phco7g02312 2086 FunFam Activating signal cointegrator 1 complex subunit 3 1777 1913 - -
Phco7g02312 2086 SMART ultradead3 1283 1487 IPR014001 -
Phco7g02312 2086 SMART ultradead3 435 646 IPR014001 -
Phco7g02312 2086 Gene3D - 1684 1777 IPR036388 -
Phco7g02312 2086 SMART AAA_5 1301 1472 IPR003593 GO:0016887
Phco7g02312 2086 SMART AAA_5 453 634 IPR003593 GO:0016887
Phco7g02312 2086 PIRSF BRR2 13 2085 - -
Phco7g02312 2086 Gene3D - 427 638 IPR027417 -
Phco7g02312 2086 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 448 630 IPR014001 -
Phco7g02312 2086 Gene3D - 1778 1914 - -
Phco7g02312 2086 SUPERFAMILY Sec63 N-terminal domain-like 967 1142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02312 Phco-Chr7 40631803 40682061 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g02312 7 40631803 40682061 Phco7g02312 7 40631803 40682061 ECH