Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02214 ATGGCTTCCTCTCTTTCCCCTTCTCCCTCTTCCCTCGACCAAACCCTTCGCGACGTCGACGACTACGTTTTGGAAAATAAGTCAGAAGATTTGTCATGGGACACAATACATTACGTTTACGAGCTTGTGCAGAATGGCAATGCTGCGTTTCGACAGAACAGAATGGAAGAGGCAATCAATTTTTACTCCAGAGCCAATAACATCAAATCAGGTGATCCAATCATCCTCAGCAATCGAAGTGCAGCATATATTAGGATTAGCCAATATTTCATGAGCAGAACACCATCATCTTCAGAATGTAGGCCATTGAGTGGGCTTGAACCCACAACACTTGCTGAATTGGCTTTGAAGGATGCTGAAAAGCTTGTTGAACTCCAAAGTAATGTAGCAAAATCATATCTTTTAAAGGCCAATGCTCTTCTCCTGTTAGAGAAATATGAAAAAGCCCGGGATGTTATTCTTTCAGGCCTTCAAGTTGATCCCTTTAGTAATTCTCTTCGGGCTTCTCTTCAAAATATAGAAAGGGTTTCATCTAGTTCAACAAGGACGAGTACACATGGACAACCGGAGCGTAATGATGATTTTGATTGCACTCTCTGCCTGAAGTTACTGTATGAACCTGTCACAACCCCTTGTGGACATTCTTTTTGTCGTTCATGTCTATTTCAGTCAATGGATCGTGGAAACAGATGCCCATTGTGCAGGACAGTTCTGTTTATTAGTCCCAGAACATGTTCCATCAGTGTGACGTTGAAGAACATCATACAAAAGAACTTTCCTGAGGAATATGCTGAAAGGAAGGAAGAGCAGGATGGTTTAATCAACGCTGGTGTTGATTTACTCCCTCTTTTTGTCATGGATGTTGTCATACCATGTCAAAGGTTTCCGCTCAATATATTTGAACCCCGGTATAGACTCATGGTAAGAAGAATAATGGAAGGCAATCATCGGATGGGAATGGCTATACTTGATTCTTCGTCAGGTTCCTTAGCTGAGTTTGCCTGTGAAGTAGAAATCACCGAGTGTGAACCACTTCCAGATGGTCGTTTTTATATAGAGATTGAAAGTCGTAGGAGATTTCGTATCATCCGATCATGGGATCAAGATGGGTATCGTGTTGCCGAGGTTGAATGGATGCAGGATATTATGGCACCAGAAGGGAGTACTGAAAGAGAGACTTTACAGGAATTGACATATAATGCAGCTGAAAGTGCTCGATCATGGATAGGAAGAGCTAAAGAAGCAGCAAGACATGATCAAAGAAAACTTGAGAGACTCGCCAGTGTTGAACTGATGATGCCCTCATTAAAAGACCCTGAGCGCTTTAGTTTCTGGCTGGCTACCCTCTCCAATAGGAGGCCTGCGGAAAGATTAGATCTCCTACGCATTAGAGATACAACCGAGAGGATTAGACGGGGCCTGATATTTCTCCGACAAGAAGAACAAGGCTGCAGAATTCAGTAA 1464 0.4276 MASSLSPSPSSLDQTLRDVDDYVLENKSEDLSWDTIHYVYELVQNGNAAFRQNRMEEAINFYSRANNIKSGDPIILSNRSAAYIRISQYFMSRTPSSSECRPLSGLEPTTLAELALKDAEKLVELQSNVAKSYLLKANALLLLEKYEKARDVILSGLQVDPFSNSLRASLQNIERVSSSSTRTSTHGQPERNDDFDCTLCLKLLYEPVTTPCGHSFCRSCLFQSMDRGNRCPLCRTVLFISPRTCSISVTLKNIIQKNFPEEYAERKEEQDGLINAGVDLLPLFVMDVVIPCQRFPLNIFEPRYRLMVRRIMEGNHRMGMAILDSSSGSLAEFACEVEITECEPLPDGRFYIEIESRRRFRIIRSWDQDGYRVAEVEWMQDIMAPEGSTERETLQELTYNAAESARSWIGRAKEAARHDQRKLERLASVELMMPSLKDPERFSFWLATLSNRRPAERLDLLRIRDTTERIRRGLIFLRQEEQGCRIQ 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02214 487 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 182 276 IPR013083 -
Phco7g02214 487 Pfam Zinc finger, C3HC4 type (RING finger) 197 234 - -
Phco7g02214 487 SUPERFAMILY RING/U-box 192 260 - -
Phco7g02214 487 Gene3D Tetratricopeptide repeat domain 29 179 IPR011990 GO:0005515
Phco7g02214 487 SUPERFAMILY TPR-like 38 170 IPR011990 GO:0005515
Phco7g02214 487 ProSitePatterns Zinc finger RING-type signature. 212 221 IPR017907 -
Phco7g02214 487 SMART ring_2 197 234 IPR001841 -
Phco7g02214 487 SMART lon_5 280 479 IPR003111 -
Phco7g02214 487 ProSiteProfiles Zinc finger RING-type profile. 197 235 IPR001841 -
Phco7g02214 487 SMART tpr_5 39 72 IPR019734 GO:0005515
Phco7g02214 487 SMART tpr_5 130 163 IPR019734 GO:0005515
Phco7g02214 487 SUPERFAMILY PUA domain-like 281 477 IPR015947 -
Phco7g02214 487 CDD RING-HC_LONFs_rpt2 194 238 - -
Phco7g02214 487 ProSiteProfiles Lon N-terminal domain profile. 278 479 IPR003111 -
Phco7g02214 487 PANTHER RING FINGER PROTEIN 127 24 480 - -
Phco7g02214 487 Pfam ATP-dependent protease La (LON) substrate-binding domain 281 478 IPR003111 -
Phco7g02214 487 Gene3D - 416 479 - -
Phco7g02214 487 Gene3D - 279 381 IPR046336 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02214 Phco-Chr7 39085718 39095071 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g02214 7 39085718 39095071 Phco7g02214 7 39085718 39095071 ECH