Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02109 ATGATCAAACGTTCAGCCATGGGTTCCATTTGCATGTGCCATTTCATTCTACCACTGACCATTGTTGTTGTTGCAACTCTAGGAGACAGCACAACAGAATCCTATTGGCTTCTGAAAATTAAATCAGAACTTGTTGATCCATCAGGAGCCCTTAGAAACTGGTCTCCAACAACTCATATTTGTAGCTGGAATGGACTAACATGTGAAGTTGATCAGACACATGTGGTAGGACTTAATTTGTCTGGCTCAGGAATATCAGGTTCCATTTCAGGTGAGTTCAGTCACCTCATTTCTCTTCAAGCACTTGATTTGTCTTCAAATAACCTCACAGGCTCCATCCCTTCTGAACTTGGGCAGCTTCAAAATCTAAGAATACTGCTTCTCTACTCAAACTATCTCTCCCTTAACATTCCTGAAGAGATAGGTAATTTGAGTAAGTTGCAAGTTCTTAGACTAGGAGATAACATGTTGGCAGGTGAAATCCCACCTAGCATTGGCAACTTGAGTGAGTTGACAGTGTTAGGTGTAGCCAACTGCAACTTAAATGGAAGCATTCCTAGTGAGGTTGGGAACTTGAAGCATCTTGTGTCTCTTGATTTACAAGTGAACACTCTTAGCGGACTCATACCAGAAGAGATTCAAGGCTGTCAAGAGCTCCAGAATTTTGCAGCATCAAACAACATGCTTGAAGGAGAAATACCCTCCTCAATGGGGTCTCTGAAATCATTGAGAATTTTGAACCTGGCCAATAACACTCTATCTGGATCAATTCCTACCTCTTTGAGTCTTCTCTCCAATTTGACATACCTTAATTTGCTTGGAAACAAATTAAATGGGGAAATTCCTCCAGAGCTAAACAGTTTGAGCCAGCTACAGAAGCTTGACTTATCCAGAAACAACCTTTCTGGATCACTAACCCTCCTTAATGTCAAACTACAGAATCTTGAAACTATGGTTCTGTCTGATAATGCTTTAACAGGTATTCCATACAACTTCTGCCTCAGAGGTTCTAAACTTCAGCAACTGTTCTTGGCTAGGAATAAGCTTTATGGAAGATTTCCCTTGGCGCTACTCAACTGCTCTTCAATCCAACAGGTGGACCTTTCTGACAACAGTTTTGAAGGTGAGCTTCCATCCAGCCTGGACAAACTACAGAATCTCACAGATCTTATGCTCAACAACAACAGCTTCATTGGATCTCTACCTCCGGCAATTGGAAATATTAGTAGCTTGAGAAGTCTTTTCTTGTTTGGAAACTCTTTCACAGGAAAAATCCCAGCGGAGATTGGAAGGCTAAAGAGATTGAACACCATTTATCTGTATGATAACCAGATGTCTGGACCTATTCCAAGAGAGTTAACAAACTGCACAAGCTTAACTGGAATTGACTTCTTTGGAAACCATTTTTATGGCTCCATTCCAGATACTATAGGTAAGCTAAAGGGCTTAACTGTTCTCCATTTAAGGCAAAATGACCTGTCAGGTCCAATCCCACCAAGCATGGGGTACTGTAAAAGGCTTCAGTTATTGGCATTAGCAGATAACAAGTTGTCAGGTTCCATACCCCCCACATTCAGTTACCTCTCACAACTTCGTACCATTACCCTTTACAACAACTCCTTTGAAGGACCACTACCTCATTCCCTCTCTCTTCTTAGAAACCTTAAAATCATAAATTTTTCCAATAACAAGTTCAGTGGTAGTATCTTTCCTCTGACTGGTTCAAATTCTCTCACTGTTTTGGACTTGACAAACAACAGCTTTTCAGGTTCCATCCCTTCTATTCTAGCCAACTCTGGAGATCTCACCCGTCTCAGACTTGCAAACAATTACCTCACAGGAACCATTCCTTCTGAACTTGGTCATCTCACTGAGCTAAACTTCCTTGATTTATCATTCAACAATTTAACAGGACATGTGCCACCTCAACTCTCCAACTGCAAAAGAATTGAACACCTTCTACTGAATAATAATAGATTGGGTGGCGAAATGTTGCCGTGGTTAGGAAGCTTGCAAGAACTTGGTGAGCTGGATCTCTCATTCAACAACTTTCGTGGAAGAGTTCCTGCTGAGCTCGGAGGCTGCTCAAAGTTGCTTAAGCTTTCGCTCCATCACAACAATCTCTCTGGAGAAATCCCTCTAGAGATTGGAAACCTTACTTCACTCAATGTCTTCAACTTACAAAGGAATAGTCTCTCTGGCCACATTCCATCAACAATTCAGCAATGCTCTAAGCTGTATGAGCTAAGGCTCTCAGAGAACTTCCTCTCAGGTATTATACCAGTTGGACTAGGATCAGTCACCGAGTTGCAAGTCATATTGGACCTCAGTGGAAACCTCTTTTCTGGTGAGATTCCATCATCTCTAGGAAATCTCATGAAGCTAGAAAGACTTGATCTTTCTTTTAACCATCTTCAAGGACAAGTTCCTCCTTCACTTGGTCAACTTACGAGCCTGCATGTCCTAAATCTTTCAAATAACCATCTTCATGGTCTCATTCCATCAACCTTTTCAGGGTTCCCACTAAGCTCTTTTCTGAATAATGACCACCTGTGTGGCCCTCCTCTAGCATTGTGCTCAGAAGCTTCGCGAATGAAACTGTCAAACTCACAAGTAGCAGCAATCATAGTAGCCATTGTCCTTACTTCGACTCTGATTTGCTTAGTATTGTTGTATATAATGTTGAGAATCTGGTGCAACTGGATAAAGGTAGCTGTTTCAAGTGAAGATGGTGGCATGGTTGAGCAAAAGACAAGAAATGGAGAGTACTGGAACATGAACTCCCCTGAGCTGTTTCCTTCACCAGAAAAACAAATTTCAGCTACAACTTGCATTTGTAATCTCAAAATTGATGCAGCAGCCAGGGAAAATACCTTGGTCAGATAA 2886 0.4148 MIKRSAMGSICMCHFILPLTIVVVATLGDSTTESYWLLKIKSELVDPSGALRNWSPTTHICSWNGLTCEVDQTHVVGLNLSGSGISGSISGEFSHLISLQALDLSSNNLTGSIPSELGQLQNLRILLLYSNYLSLNIPEEIGNLSKLQVLRLGDNMLAGEIPPSIGNLSELTVLGVANCNLNGSIPSEVGNLKHLVSLDLQVNTLSGLIPEEIQGCQELQNFAASNNMLEGEIPSSMGSLKSLRILNLANNTLSGSIPTSLSLLSNLTYLNLLGNKLNGEIPPELNSLSQLQKLDLSRNNLSGSLTLLNVKLQNLETMVLSDNALTGIPYNFCLRGSKLQQLFLARNKLYGRFPLALLNCSSIQQVDLSDNSFEGELPSSLDKLQNLTDLMLNNNSFIGSLPPAIGNISSLRSLFLFGNSFTGKIPAEIGRLKRLNTIYLYDNQMSGPIPRELTNCTSLTGIDFFGNHFYGSIPDTIGKLKGLTVLHLRQNDLSGPIPPSMGYCKRLQLLALADNKLSGSIPPTFSYLSQLRTITLYNNSFEGPLPHSLSLLRNLKIINFSNNKFSGSIFPLTGSNSLTVLDLTNNSFSGSIPSILANSGDLTRLRLANNYLTGTIPSELGHLTELNFLDLSFNNLTGHVPPQLSNCKRIEHLLLNNNRLGGEMLPWLGSLQELGELDLSFNNFRGRVPAELGGCSKLLKLSLHHNNLSGEIPLEIGNLTSLNVFNLQRNSLSGHIPSTIQQCSKLYELRLSENFLSGIIPVGLGSVTELQVILDLSGNLFSGEIPSSLGNLMKLERLDLSFNHLQGQVPPSLGQLTSLHVLNLSNNHLHGLIPSTFSGFPLSSFLNNDHLCGPPLALCSEASRMKLSNSQVAAIIVAIVLTSTLICLVLLYIMLRIWCNWIKVAVSSEDGGMVEQKTRNGEYWNMNSPELFPSPEKQISATTCICNLKIDAAARENTLVR 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02109 961 PRINTS Leucine-rich repeat signature 288 301 - -
Phco7g02109 961 PRINTS Leucine-rich repeat signature 99 112 - -
Phco7g02109 961 Pfam Leucine rich repeat N-terminal domain 37 68 IPR013210 -
Phco7g02109 961 FunFam Uncharacterized protein 187 281 - -
Phco7g02109 961 Gene3D Ribonuclease Inhibitor 456 526 IPR032675 -
Phco7g02109 961 SMART LRR_typ_2 288 311 IPR003591 -
Phco7g02109 961 SMART LRR_typ_2 240 263 IPR003591 -
Phco7g02109 961 SMART LRR_typ_2 623 647 IPR003591 -
Phco7g02109 961 SMART LRR_typ_2 671 695 IPR003591 -
Phco7g02109 961 SMART LRR_typ_2 816 839 IPR003591 -
Phco7g02109 961 SMART LRR_typ_2 384 408 IPR003591 -
Phco7g02109 961 SMART LRR_typ_2 792 815 IPR003591 -
Phco7g02109 961 SMART LRR_typ_2 192 215 IPR003591 -
Phco7g02109 961 SMART LRR_typ_2 480 504 IPR003591 -
Phco7g02109 961 SMART LRR_typ_2 144 168 IPR003591 -
Phco7g02109 961 SMART LRR_typ_2 312 335 IPR003591 -
Phco7g02109 961 SMART LRR_typ_2 96 120 IPR003591 -
Phco7g02109 961 SMART LRR_typ_2 719 743 IPR003591 -
Phco7g02109 961 FunFam Uncharacterized protein 378 473 - -
Phco7g02109 961 SUPERFAMILY L domain-like 33 303 - -
Phco7g02109 961 SUPERFAMILY L domain-like 655 855 - -
Phco7g02109 961 Gene3D Ribonuclease Inhibitor 527 863 IPR032675 -
Phco7g02109 961 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 571 863 - -
Phco7g02109 961 ProSiteProfiles Leucine-rich repeat profile. 818 839 IPR001611 GO:0005515
Phco7g02109 961 PANTHER LEUCINE-RICH REPEAT SERINE/THREONINE-PROTEIN KINASE 1 773 905 - -
Phco7g02109 961 Pfam Leucine Rich Repeat 818 840 IPR001611 GO:0005515
Phco7g02109 961 Pfam Leucine Rich Repeat 794 814 IPR001611 GO:0005515
Phco7g02109 961 Gene3D Ribonuclease Inhibitor 180 278 IPR032675 -
Phco7g02109 961 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 474 570 - -
Phco7g02109 961 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 282 377 - -
Phco7g02109 961 SUPERFAMILY RNI-like 367 709 - -
Phco7g02109 961 Gene3D Ribonuclease Inhibitor 383 455 IPR032675 -
Phco7g02109 961 Gene3D Ribonuclease Inhibitor 29 179 IPR032675 -
Phco7g02109 961 Gene3D Ribonuclease Inhibitor 279 380 IPR032675 -
Phco7g02109 961 ProSiteProfiles Leucine-rich repeat profile. 242 264 IPR001611 GO:0005515
Phco7g02109 961 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 30 186 - -
Phco7g02109 961 ProSiteProfiles Leucine-rich repeat profile. 98 120 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02109 Phco-Chr7 37018947 37021832 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g02109 7 37018947 37021832 Phco7g02109 7 37018947 37021832 ECH