Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02073 ATGGATCCCAACCCTGGAACCTTTCCCCTCCTCTCCTACGTCATGTCGCGCCTCCCTTCCCTCACCCTTAGACCAGCCGCCGCCGCCACCGCGAACTCTGACTCCGACCAATTCGACATCGAGCAGCCGCGCGCCGCAGAGATCGTGGGGCAAATGCCGCACCTCGCCGACCCGGACCTCATGGCCTCCATGGGCCGGGCCGTATCCCAGGTGGCCCAGGCCCGAACGGTCCTGAACCTGATCGGGGAGCGGCCCACGCACGAGGAAGTCGACAGCGCCAGGGCCAGGCTCGCGGAGATCGAGGCCCAGCTGTCCCACGACCTGGAGGAGATTGTGCTCCGGGCCCGGCCCGCGGAGATGGAGATTCACGGGTGGCGGGCCCAGCAGGCCGAGAAAGAGAGGGAGTGCAGGGAGCTGGCGGAGACGGAGAAGCGAATCTGGAAGTCGGTGCTGCAGCTGGACGAGATGCACGAGGCCTACGAGAAGCTTCTGAAGGAGGCGGAGAAGCGGTTGGTGAAAATGTACGAGATGAAGGAAGATGGTGATGGCGATGTTGTTGGCGAGGAAGTGAACGAAGAGGTTGTGGGAATTCTTCAAGAGGCCTATGGCAAGGGAATGGAACGCGTCAATCTTTCTGGACGCCAATTGAAGCTCTTGCCTGAAGCATTTGGTCGCATTCCTGGCTTGCTCCTGCTTGATCTTTCTGCCAATCAACTCTCTGCTATTTCTGATTCAATAGCTGGACTGCAAAACCTTGTGGAGCTTAATCTGTCTTCAAATCTTTTGGAGTCTCTGCCTGATTCAATTGGGTTATTACAAAAGTTGAAATTGCTCAATGTCTCTGGAAACAAGCTGACTGCGCTTCCTGATCCCATCTGTCACTGCAGGTCATTGGTTGAGTTGGATGTGAGCTTTAACAATCTATCATATTTGCCAACAAACATTGGATATGAATTACCGAACTTGCAGAAACTCATTATTCAGTTGAACAAGATTCGATCTCTTCCCTCATCTATCTGTGAGTTGAAGTCCTTGCGCTATTTGGATGCTCACTTCAATGAGCTACATGGGCTTCCTATTGCAATTGGGAGACTGACTAATCTTGAGGTTCTCAACCTGAGCAGTAACTTCAGTGACCTCAAAGAACTACCAGAGACATTTGGTGATTTGACTAACCTCAGGGAATTGGATCTCAGCAATAATCAGATCCATGCACTTCCTGATACATTTGGGCGCCTTGATAATTTGACCAAGCTAAACTTGGAGCAGAATCCTCTTGAATTGCCACCAATGGAGATTGTAAATCAAGGGGTTGAAGCCGTAAAGACCTTTATGGCCAAGAGGTGGCTTGATATATTGTTGGAGGAGGAGAGCAAAAGCAGCCAAGAAATGCAAGAACTAGAACAGGGTGGTTGGTTAACACGAAGCACCTCCTGGTTGAAGAATGTTTCTGGAAATGTAATTGGGTATATTGGAACTGCCGTTGGAACTCCTATGTCGCCCAAATCTCCCAGAGATGCATATCTTGATCAGCAGCTATGA 1542 0.5123 MDPNPGTFPLLSYVMSRLPSLTLRPAAAATANSDSDQFDIEQPRAAEIVGQMPHLADPDLMASMGRAVSQVAQARTVLNLIGERPTHEEVDSARARLAEIEAQLSHDLEEIVLRARPAEMEIHGWRAQQAEKERECRELAETEKRIWKSVLQLDEMHEAYEKLLKEAEKRLVKMYEMKEDGDGDVVGEEVNEEVVGILQEAYGKGMERVNLSGRQLKLLPEAFGRIPGLLLLDLSANQLSAISDSIAGLQNLVELNLSSNLLESLPDSIGLLQKLKLLNVSGNKLTALPDPICHCRSLVELDVSFNNLSYLPTNIGYELPNLQKLIIQLNKIRSLPSSICELKSLRYLDAHFNELHGLPIAIGRLTNLEVLNLSSNFSDLKELPETFGDLTNLRELDLSNNQIHALPDTFGRLDNLTKLNLEQNPLELPPMEIVNQGVEAVKTFMAKRWLDILLEEESKSSQEMQELEQGGWLTRSTSWLKNVSGNVIGYIGTAVGTPMSPKSPRDAYLDQQL 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02073 513 ProSiteProfiles Leucine-rich repeat profile. 392 413 IPR001611 GO:0005515
Phco7g02073 513 FunFam Plant intracellular Ras-group-related LRR protein 2 314 487 - -
Phco7g02073 513 ProSiteProfiles Leucine-rich repeat profile. 251 272 IPR001611 GO:0005515
Phco7g02073 513 PRINTS Leucine-rich repeat signature 229 242 - -
Phco7g02073 513 PRINTS Leucine-rich repeat signature 390 403 - -
Phco7g02073 513 Coils Coil 450 470 - -
Phco7g02073 513 FunFam Plant intracellular Ras-group-related LRR protein 9 132 310 - -
Phco7g02073 513 PANTHER DISCS LARGE 217 437 - -
Phco7g02073 513 SMART LRR_typ_2 390 413 IPR003591 -
Phco7g02073 513 SMART LRR_typ_2 249 271 IPR003591 -
Phco7g02073 513 SMART LRR_typ_2 296 318 IPR003591 -
Phco7g02073 513 SMART LRR_typ_2 365 389 IPR003591 -
Phco7g02073 513 SMART LRR_typ_2 226 248 IPR003591 -
Phco7g02073 513 SMART LRR_typ_2 272 295 IPR003591 -
Phco7g02073 513 SMART LRR_typ_2 319 342 IPR003591 -
Phco7g02073 513 SUPERFAMILY L domain-like 204 431 - -
Phco7g02073 513 Gene3D Ribonuclease Inhibitor 379 440 IPR032675 -
Phco7g02073 513 Pfam Leucine rich repeat 296 355 IPR001611 GO:0005515
Phco7g02073 513 Pfam Leucine rich repeat 217 262 IPR001611 GO:0005515
Phco7g02073 513 Pfam Leucine rich repeat 367 426 IPR001611 GO:0005515
Phco7g02073 513 Coils Coil 150 177 - -
Phco7g02073 513 Coils Coil 90 110 - -
Phco7g02073 513 SMART LRR_bac_2 249 268 - -
Phco7g02073 513 SMART LRR_bac_2 342 361 - -
Phco7g02073 513 SMART LRR_bac_2 365 386 - -
Phco7g02073 513 SMART LRR_bac_2 272 291 - -
Phco7g02073 513 SMART LRR_bac_2 319 338 - -
Phco7g02073 513 SMART LRR_bac_2 295 314 - -
Phco7g02073 513 SMART LRR_bac_2 226 245 - -
Phco7g02073 513 SMART LRR_bac_2 390 409 - -
Phco7g02073 513 Gene3D Ribonuclease Inhibitor 310 378 IPR032675 -
Phco7g02073 513 Gene3D Ribonuclease Inhibitor 128 309 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02073 Phco-Chr7 36178192 36180855 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g02073 7 36178192 36180855 Phco7g02073 7 36178192 36180855 ECH