Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02034 ATGGAGGACTCAAACGGCAACAATAGACCAATTGATGAGCTGTTTGTGAAGAGAAGAACTGTGCAGTCACTGTGTCACCGACCACGGTGCTGTGGCTCAATCATCTTTCCCATGATACTCATTACACGACAAACAAAAAACAATCAATTTCGCCCATGCCCCTCCAAGGATAGAGAATTTATGGGCGGATCAATTTCAAAACGAAGGAGTTCTAGGCAACGTTCGTCCTCAAATTTTTTCCCTCGGTATCAATCGCCTTATTTGCCACAAAGCCAAGATCAAGGGTCTGTGAGGCATTACGGGTATTCATCTCAAAGCAATGATGGTGGTCCTGCTCCAGAGCAAGGAAAGAGATCAGATGGGAAGTATTCAAGGATAGCTGATAATTTTAAGAGCTTAGACCAGGTAACTGAAGCTCTAGCAAATGCTGGCCTAGAATCTTCTAATCTCATTGTTGGTATTGATTTTACCAAGAGCAATGAGTGGACAGGTGCAAGGTCATTTCAAAGGAGATGCCTGCATCACATTGGTCACGAACAAAATCCGTATGAACAAGCTATATCTATCATTGGGAAAACACTATCATCCTTTGATGAGGATAACTTAATTCCCTGTTTTGGTTTCGGAGATGCATCAACACATGATCAAGAAGTTTTTAGTTTCTATCCTGATGAGAGATTTTGTCAAGGATTTGAAGAAGTGTTGGGACGATATAGGGAATTGGTCCCTCAATTAAAGCTTGCTGGACCAACATCATTTGCTCCAGTCATTGAGATGGCAATCACTATAGTCGAGCAAAGTGGAGGCCAATACCATGTCTTAGTGATTATAGCTGATGGGCAGGTGACGAGAAGTGTTGACACTGAGCATGGGCAGTTGAGTGCACAAGAAAAGAAAACTGTAGAAGCTATTGTGAAAGCTAGTGAATATCCCTTGTCAATCATATTAGTTGGAGTTGGAGATGGGCCGTGGGATATGATGAAACAATTTGACGATAACATCCCTGCCCGAGCATTTGATAATTTCCAGTTTGTGAATTTCACAGAAATAATGTTGAAGAACATGGATCGGTCCAGAAAGGAAACTGAGTTTGCACTGGCTGCCTTGATGGAAATACCCTACCAGTACAAGGCAACACTAGAGCTTAATACATTAGGCACTCGAAGCGGGAAAGATGTTGACAGGGTTCCTCTGCCACCCCCTCTATATGGTGCAGCATCTTTCAACTCCCCGAAAACATCCCGTCAGAACAGTTTTCGTCCCAGTGCACCATCTAGCAGACATGATGTTAGTACGAATCCTCCAGCAACTTCTGCTTCTGATAATCAGGTTTGTCCCATTTGCCTCACCAATCCTAAGGATATGGCCTTTGGTTGCGGGCATCAGACATGCTGTGAGTGTGGACAAGATCTTGAGTTATGCCCCATTTGCAGGAGTACCATTGATACTAGAATAAAACTTTATTAG 1467 0.4308 MEDSNGNNRPIDELFVKRRTVQSLCHRPRCCGSIIFPMILITRQTKNNQFRPCPSKDREFMGGSISKRRSSRQRSSSNFFPRYQSPYLPQSQDQGSVRHYGYSSQSNDGGPAPEQGKRSDGKYSRIADNFKSLDQVTEALANAGLESSNLIVGIDFTKSNEWTGARSFQRRCLHHIGHEQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDERFCQGFEEVLGRYRELVPQLKLAGPTSFAPVIEMAITIVEQSGGQYHVLVIIADGQVTRSVDTEHGQLSAQEKKTVEAIVKASEYPLSIILVGVGDGPWDMMKQFDDNIPARAFDNFQFVNFTEIMLKNMDRSRKETEFALAALMEIPYQYKATLELNTLGTRSGKDVDRVPLPPPLYGAASFNSPKTSRQNSFRPSAPSSRHDVSTNPPATSASDNQVCPICLTNPKDMAFGCGHQTCCECGQDLELCPICRSTIDTRIKLY 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02034 488 Pfam Copine 172 386 IPR010734 -
Phco7g02034 488 SUPERFAMILY vWA-like 149 331 IPR036465 -
Phco7g02034 488 SMART VWA_4 147 350 IPR002035 -
Phco7g02034 488 PANTHER COPINE FAMILY PROTEIN 1 84 465 - -
Phco7g02034 488 MobiDBLite consensus disorder prediction 402 440 - -
Phco7g02034 488 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 423 488 IPR013083 -
Phco7g02034 488 MobiDBLite consensus disorder prediction 48 122 - -
Phco7g02034 488 ProSiteProfiles Zinc finger RING-type profile. 445 478 IPR001841 -
Phco7g02034 488 SUPERFAMILY RING/U-box 439 484 - -
Phco7g02034 488 MobiDBLite consensus disorder prediction 66 112 - -
Phco7g02034 488 Pfam Zinc finger, C3HC4 type (RING finger) 442 483 - -
Phco7g02034 488 MobiDBLite consensus disorder prediction 407 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02034 Phco-Chr7 35058516 35063438 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g02034 7 35058516 35063438 Phco7g02034 7 35058516 35063438 ECH