Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01961 ATGCACACCGAGTGTTCACAGTACCCTCAGTTCACAATGGCGGTCACCAGTACTTCAAGAATCCCTTTTTCTGCTTGTTCCTGCTACTCGGCCTTTCCCAAACGCATTGTCAGATCCACCGTCCCTCTCTCTCACCCAATCCTCAGCAAGCCCTCTCCCGCAATATCATGTTCCCACCCCAAGCCTCCGGCAGCCACACCACCCGCCTTGGTCCTGTCGCCTCCGGCCGCCGAGCCCTTCCTCTCGCGATTCGCTCCAGACGAGCCACGTAAGGGCGCGGACATCCTAGTTGAGGCGCTGGAGCGGCAGGGCGTCACCACCGTCTTCGCGTACCCCGGCGGCGCGTCGATGGAGATCCACCAGGCGCTCACGCGCACCGCGGCCATTCGCAACGTGCTCCCGCGCCACGAGCAGGGCGGCGTGTTCGCGGCTGAGGGCTACGCGCGGTCGACGGGGCTCCCCGGCGTGTGCATCGCCACCTCTGGCCCCGGCGCCACGAACCTCGTCAGCGGCCTAGCGGACGCGATGATGGACAGCGTGCCGGTGGTGGCCATCACCGGGCAGGTCCCGCGGCGGATGATCGGCACCGACGCCTTCCAGGAAACCCCCATCGTGGAAGTTTCCAGATCCATCACCAAACACAACTACCTCATTGTCGACGTGGACGACATTCCTCGGGTCGTGAGCGAGGCCTTCTTCGTCGCTACTTCGGGCCGGCCCGGCCCAGTCCTGATCGACGTCCCCAAAGACGTTCAGCAGCAATTGGCGGTTCCTAATTGGGACCTTCCAGTTAAGCTCCCCGGGTACACCGCCAGGCTGCCCAAGCTCTCCTGCGAGGCCGAACTGGAGCAGATTGTCAGACTCATATTGGAGGCCCAGAAGCCCGTTTTATATGTGGGAGGTGGCTCTTTGAACTCCAGCGCAGAGTTAAAGCGGTTTGTGGAACTCACCGGGATTCCTGTTGCCAGCACTTTAATGGGCCTTGGAACTTTTCCTATTGGCCACGAGCATTCCCTTCAAATGTTGGGCATGCATGGTACTGTTTATGCCAACTACGCCGTTGATAAGAGTGATTTGTTGCTTGCCTTTGGGGTGAGGTTTGACGACCGTGTCACCGGAAAGCTCGAGGCTTTTGCTAGTAGGGCTAAGATTGTTCACATTGATATTGATTCCGCTGAGATTGGGAAGAATAAGCAGCCACACGTATCGATTTGTGGGGATTTGAAGTTGGCATTGCAGGGAATTAATAGGATTTTGGAGGATATGGGGGTGAAGGGTAAGGTTGATTTTGGAGCTTGGAGAGCAGAGATTAATGTGCAGAAAGAAAAGTTTCCTTTGAGTTATAAGAAGTTTGATAATGGGATTTCTCCTCAGTACGCTATTGAGGTTCTTGATGAGTTGACAAATGGGGATGCTATTATTAGCACTGGGGTAGGGCAGCATCAAATGTGGGCTGCGCAATTCTACAAGTACAAGAGGCCTAGACAGTGGTTGACGTCAGGGGGTCTTGGAGCTATGGGTTTTGGATTGCCTGCGGCTATGGGTGCTGCTGTTGCTAACCCTGGTGCTGTGGTGGTTGACATTGATGGGGATGGGAGTTTCATAATGAATGTTCAGGAGTTGGCCACTATAAGAGTGGAGAATATCCCTGTGAAGATATTGTTGTTGAATAACCAGCACTTGGGTATGGTGGTTCAGTGGGAGGATCGGTTCTACAAGGCCAACAGAGCTCACACCTATCTGGGAGATCCCTCCAGGGAGAATGAGATATTCCCCAACATGCTAAAGTTTGCAGATGCTTGTGGGATACCTGCAGTGCGTGTGACTAAGAAGGAAGAACTTAGAGAAGCAGTTCAGAAAATGTTGGACACCCCTGGCCCCTATCTTCTTGAGGTCATAGTGCCTCATCAGGAACACGTGTTGCCGATGATTCCCAGTAATGGATCCTTCGAGGATGTGATTACTGACGGTGATGGTAGAACAAGATACTGA 1992 0.5427 MHTECSQYPQFTMAVTSTSRIPFSACSCYSAFPKRIVRSTVPLSHPILSKPSPAISCSHPKPPAATPPALVLSPPAAEPFLSRFAPDEPRKGADILVEALERQGVTTVFAYPGGASMEIHQALTRTAAIRNVLPRHEQGGVFAAEGYARSTGLPGVCIATSGPGATNLVSGLADAMMDSVPVVAITGQVPRRMIGTDAFQETPIVEVSRSITKHNYLIVDVDDIPRVVSEAFFVATSGRPGPVLIDVPKDVQQQLAVPNWDLPVKLPGYTARLPKLSCEAELEQIVRLILEAQKPVLYVGGGSLNSSAELKRFVELTGIPVASTLMGLGTFPIGHEHSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSICGDLKLALQGINRILEDMGVKGKVDFGAWRAEINVQKEKFPLSYKKFDNGISPQYAIEVLDELTNGDAIISTGVGQHQMWAAQFYKYKRPRQWLTSGGLGAMGFGLPAAMGAAVANPGAVVVDIDGDGSFIMNVQELATIRVENIPVKILLLNNQHLGMVVQWEDRFYKANRAHTYLGDPSRENEIFPNMLKFADACGIPAVRVTKKEELREAVQKMLDTPGPYLLEVIVPHQEHVLPMIPSNGSFEDVITDGDGRTRY 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01961 663 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 86 269 IPR029061 -
Phco7g01961 663 FunFam Acetolactate synthase, mitochondrial 446 662 - -
Phco7g01961 663 PANTHER THIAMINE PYROPHOSPHATE ENZYMES 89 651 IPR045229 -
Phco7g01961 663 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 453 656 IPR029061 -
Phco7g01961 663 CDD TPP_AHAS 455 646 IPR039368 GO:0030976
Phco7g01961 663 ProSitePatterns Thiamine pyrophosphate enzymes signature. 514 533 IPR000399 GO:0000287|GO:0030976
Phco7g01961 663 Pfam Thiamine pyrophosphate enzyme, central domain 283 413 IPR012000 GO:0000287|GO:0030976
Phco7g01961 663 FunFam Acetolactate synthase 276 446 - -
Phco7g01961 663 Pfam Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 477 632 IPR011766 GO:0003824|GO:0030976
Phco7g01961 663 NCBIfam biosynthetic-type acetolactate synthase large subunit 91 654 IPR012846 GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660
Phco7g01961 663 Gene3D - 80 273 - -
Phco7g01961 663 FunFam Acetolactate synthase 85 268 - -
Phco7g01961 663 Gene3D - 447 633 - -
Phco7g01961 663 Pfam Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 91 254 IPR012001 GO:0030976
Phco7g01961 663 SUPERFAMILY DHS-like NAD/FAD-binding domain 281 445 IPR029035 -
Phco7g01961 663 Gene3D - 282 446 - -
Phco7g01961 663 CDD TPP_PYR_POX_like 94 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01961 Phco-Chr7 33091626 33093617 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g01961 7 33091626 33093617 Phco7g01961 7 33091626 33093617 ECH