Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01728 ATGGAATCCCACAAAACAACCTTTCCAGCTCTGCTTCTCGCCACCTGCAAACGACCCTCCTTCGCCCTCCTCTTCCTCCTCTTCACCCTCCTCACCTTTCTCTCCCTCCACCTTCCCGTCAGGCCCGTCTGGCTCCTCGCGGCTCCCCACCCTCCGCCCCATCCAACAACATGCGCCTCCTTCTTCCGCCACGTTCCGCCCAGGAAGGTCGTCCTGTCCATCCAGGACTTCGGAGGCGTCGGCGACGGCACCACTTCCAACACTGAATCGTTCCGCAGGGCGATTCAGTACATGCAGCGCTTCCAGAACCGCGGTGGGGGCCAGCTGAATATCCCCGCTGGAACCTGGCTCACCGGCAGTTTCAATCTCACCAGTAATTTCACGCTTTTTCTTCAACACGGTGCCGTTATTCTCGCTTCACAGGACCCGAAAGAATGGCCGATAATTGAGGCATTGCCATCTTATGGAAGAGGGAGAGAGAGGCTTGGAGGAAGGCATATTAGCCTTATTCATGGAAATGGCATTAGTAATGTTGTTATTACAGGACTAAATGGGACAGTTGATGGTCAAGGAAAGATGTGGTGGGAACTTTGGTGGAACAGAACATTGGAGCATACAAGAGGGCACCTCCTTGAACTAATGAACTCGGATAATGTTCTCATATCAAACCTCACCTTTCGAAATTCTCCTTTTTGGACCATCCATCCTGTTTACTGCAGAAATGTTGTGATCAAAGGGATGACAATCTTGGCCCCCCTTAATGCTCCTAATACTGATGGCATAGACCCAGACTCAAGTTCAAACGTATGTATTGAAGATAACTACATAGAAAGTGGGGATGATCTTGTTGCCATTAAGAGTGGTTGGGATCAATATGGAATCACGGTGGCACATCCATGCACAAATATTATAGTGAGGAGAATATCAGGAACTACCCCCACTTGTTCTGGAGTAGGCATAGGTAGTGAAATGTCTGGTGGAATTTCAAATATCACAATTGAGAATTTGCATGTGTGGGATTCTGCAGCTGGTGTTCGGATAAAATCTGACAAAGGCAGAGGAGGCTATGTAGCTAATGTTTCTATAAGTGATATAAGAATGGAGAGAGTCAAGATACCCATTAGGTTCAGTAGAGGTTCAAATGATCATCCTGATGATGGGTGGGATCCAAAAGCTGTTCCTATATTCAAAGATATTTTCATAAGTAATGTGGTCAGTATAAATTCAACAAAAGCCCCAGTTTTGGAAGGTGTAGAGGGTTCATCATTTGAAGGCTTATGCTTCAAAAACATTACCCTGCATGGTGTAGCCTTATCCACAAGATGGCGTTGTGAATATGTATCTGGTTTTGCGACCGAGGTTTTCCCTGTTCCTTGTCTCGAGTTGCGGAATAATAGCTATTCATCCTGGTGTTCACCTTCCTGA 1425 0.4688 MESHKTTFPALLLATCKRPSFALLFLLFTLLTFLSLHLPVRPVWLLAAPHPPPHPTTCASFFRHVPPRKVVLSIQDFGGVGDGTTSNTESFRRAIQYMQRFQNRGGGQLNIPAGTWLTGSFNLTSNFTLFLQHGAVILASQDPKEWPIIEALPSYGRGRERLGGRHISLIHGNGISNVVITGLNGTVDGQGKMWWELWWNRTLEHTRGHLLELMNSDNVLISNLTFRNSPFWTIHPVYCRNVVIKGMTILAPLNAPNTDGIDPDSSSNVCIEDNYIESGDDLVAIKSGWDQYGITVAHPCTNIIVRRISGTTPTCSGVGIGSEMSGGISNITIENLHVWDSAAGVRIKSDKGRGGYVANVSISDIRMERVKIPIRFSRGSNDHPDDGWDPKAVPIFKDIFISNVVSINSTKAPVLEGVEGSSFEGLCFKNITLHGVALSTRWRCEYVSGFATEVFPVPCLELRNNSYSSWCSPS 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01728 474 PANTHER PECTIN LYASE-RELATED 40 469 - -
Phco7g01728 474 SUPERFAMILY Pectin lyase-like 62 463 IPR011050 -
Phco7g01728 474 Pfam Glycosyl hydrolases family 28 168 448 IPR000743 GO:0004650|GO:0005975
Phco7g01728 474 Gene3D - 58 450 IPR012334 -
Phco7g01728 474 SMART pbh1 216 238 IPR006626 -
Phco7g01728 474 SMART pbh1 266 298 IPR006626 -
Phco7g01728 474 SMART pbh1 357 378 IPR006626 -
Phco7g01728 474 SMART pbh1 328 349 IPR006626 -
Phco7g01728 474 SMART pbh1 239 265 IPR006626 -
Phco7g01728 474 SMART pbh1 300 322 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01728 Phco-Chr7 17361980 17364980 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g01728 7 17361980 17364980 Phco7g01728 7 17361980 17364980 ECH