Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01636 ATGGGTGAAGATAGCCCGCGAGTTGGTGGGTTTTCAGCTGGTCTGGCTGTGTTATTGAACGGTGAGGACGGTAAGAAAAATTTGCCAAAAACTCGGTTACTTTCTTGCTGTGATGATTTGGGTCAGCAATCGGTGGAGCGAACCCTTGAGTATGTGTTTGGCCTCCCAAACAGATCACTCAATTCATTGAAAGGTCCGGTTGATCGTGGTTGTATTCACTCTGTCATTAGAAATGATTTCTCAAGATATAATGTGAAATTGAGTGATTCTTACAGTGAAAGAGACGGGGTTTGTTATATTAATGGTAAAAATGGCAACGGGCCTGATATTATAGGCCTAGAAGAATCAAGCATCTGTGGTGATATTAAAGTAATCAAGTCGCCTTTTCTTATAGAGAGCATGGCAATGTTCAGTAGTGCCAGGGCTAGTGCTTGTGTTTGGAAGGGAAAATGGATGTACGAAGTTATGTTGGAAACATCTGGCATACAGCAACTTGGCTGGGCCACTCTTTCTTGCCCTTTCACTGACCATAAAGGTGTTGGTGATGCTGATGATTCATATGCTTATGATGGGAGGCGAGTTAGCAAGTGGAACAAGGATGCTGAGACATATGGCCAGTCATGGGTTGTTGGTGATATTATTGGATGTTGTATAGATTTAGATCGAGATGAAATATTATTCTACAGGAATGGTAATTCACTTGGGGTTGCATTCCAAGGAATTCGAAAAATGGGTCCTGGTTTCGGTTATTATCCAGCTGTTTCTCTCTCCCAGGGTGAAAGATGTGAGTTAAACTTTGGAGCTCGACCCTTTAAGTATCCAATCGAAGGCTACCTTCCTCTTCAGGCTCCTCCCTCTAAGAACTACTTTGTCACCCAATTGCTGCAATGCTGGTCAAGACTGTTGGACATGCATTCAGTGGAACGAGCTGATCATTCCCTAGTTCAGAAATTAAGAAGAGTGAAGAGGTTTGATTCACTGGAAGAAATTTTCCATCCAGCTTCTTATGCGATATGTGAGGAATTATTCTCTATACTTGAAGCGGATGTTGGGATCACAGAGTATATGGTTTGGGGTCCACTGTTGTCTTTCATGTTTGAAGTTTTTGGTTTGCATGCTCCCCATGATTACTCAAGCTTGGATAAAGTAGTTGAGGTTATGCTACAATTTCAAGGATCCCATGTGCTATTTGAACACATCCTAAATGCTCTTTCATGTGGTTGTAAAATAGCCTTATTAATTTTAACTGAATGTCCTTACTCTGGATCATATTCTCACCTTGCATTGGCATGTCATCTATTAAGACGAGAGGAACTTATGGTGCTTTGGTGGAAGTCACCAGATTTCGAATTCGTGTTTGAAGGTTTTCTTTCACAAAAGAGTCCAAACAAACATGATCTTGACTTCATGATACCAACTGTTTGGTGGCCTGGTTCATGTGAAGATGCATCTTATGAAGGTAACATGATGTTGACAACCACAGCTTTGTCTGAATCAGTCAGCAAGATTGAGGAGAAGCATAGGGACCTTTGTCGCTTAGTGATACAATTTATACCACCTACGAATCCTCCCCAGCTACCTGGAGCAGTATTTAGGACATTTTTACGGAGCCTTCTACTGAAGAACAGAGGAGCGGAACGTAATATTCCACCCCCTGGAGTTTCTAGCAACTCGGTTCTTGTTTCAATTTACACAGTTGTACTTCATTTTCTATCTGAAGGATTTGCCTTGGGTGACATCTGTGGCTGGTTAAAGAGCTGCAAAACAGATGTTGGTTTCCTTCATAGAGGTGGTGAGCAAAGCTTCCCTGTTCATTTATTTCTTAAAAGTGATCCCCATAGAGCTGATATTTCCAGGCTTGGGGGATCCTATAGCCATTTATCAAAGCTACACCCAACATTTGATCATGAAATGGAAGTGATTCAATGGGATGAAGGTTGCATGGATAGTGAAGAAACCAGGGTCACTCATTCAACCAGGCAGAAGCCATGCTGTTGTTCTAGTTATGATTCTGATTTCACAAGGAACTTCAAGGTTCCTGCTAAATACCTGGCCAAAGGTTCTCGTGGTCATTGTAGCTCTATTCCAGAGAGACCTGCTCATGTCACTGCTGAATGCAGTGATGGGAGTTTGAATAATGAGATAACTGATAAACCTAGCCCCAGTGATCAATCTGAACCTGAGTATGGTTACCGCCAAGTGCACCATATGAAGTCTGTACCAAAGGATATTAATATCTCTTCAACTACTCTACGAGAAGAGGAGCTACTTGATGCTTTGCTATGGTTGTATCATGTTGGTCTTGCTCCAAATTTTAAGCAGGCATCATACTACATGACTCATCAGACACAGTCAATTTCCCTTTTGGAGGAAACTGATAAGCAAATAAGAGAACGAGCTTGCAGTGAGCAATTGAAACATTTGAAAGAAGTTCGTAATGAATATAGAGAAGAGGTTATCGATTGTGTTAGGCATTGTGCTTGGTACCGCATCTCTTTATTTTCAAGGTGGAAGCAGAGAGGAATGTATGCAATGTGCATGTGGGTTGTCCAGTTGCTTCTGGTTCTTAGCAATATGGATTCAGTGTTTGTATACATCCCTGAATATTATCTGGAAGCTTTGGTTGATTGCTTTCATGTGTTGCGGAAAAGTGATCCTCCCTTTGTTCCATCCACAATTTTCATCAAGAGAGGACTTACTTCATTTGTCACCTTTGTAGTTACCCATTTCAATGATCCAAGAATATCAAGTGCAGATCTTAGAGACCTTCTTCTTCAGTCTATATCTGTCCTGGTGCAGTACAGGGAATATTTGGCTACCTTTGAGAGCAATGAGGCAGCCACCCAAAGGATGCCGAAAGCTTTATTATCAGCATTTGATAACAGATCTTGGATACCAGTGACAAACATACTCTTACGATTATGCAAGGGTTCAGGTTTTAGTTTTTCAAAGAATGGAGAATCATCTTCATCATCAGTTCTATTCCAAAGGTTGCTAAGGGAAGCTTGCATAAGTGATGAAGGATTGTTTTCATCTTTTCTAAACCGACTGTTCAATACGCTAAGCTGGACCATGACTGAATTTTCGGTTTCTGTTCGAGAAATGCAAGAAAAGTACCAGGTAATAGAGTTTCAGCAAAGGAAATGTTGTGTCATATTTGATCTTTCATGTAATCTTGCAAGGATTCTGGAGTTCTGCACTCGTGAGATTCCTCAAGCATTCCTGTCTGGACCAGACACTAACCTACGAAGGTTAACCGAGTTGGTTGTATTTATCCTAAATCACATTACTTCTGCTGCCGATGCTGAATTCTTTGACTTGTCCCTTAGACGGCATAGTCAATCTCCAGAAAAAATAAACCGAGGCATGATATTGGCCCCCCTAGTAGGGATCATCTTAAATTTATTGGATGCCACAAATTCTGAAGAATACCGAGAAAACAATGATCTTTTAGATGTTTTCGCAAGCATGGACTGTCCAGATACCGTTCAGTATGGGTTCCAGTATCTTCTGGATTATAATTGGGATGGATCCTTTCGAGGGGAAGCTTATGTAGCAAAATATGAGCAGCTAGAGAATTTTCTCAGTCTCCTTACTTGCCGCACCGTATTACCACATGATAAATTGGATAGTGTGGGAGATACAGATCTTGATGATAGCTTGTGCTGCATATGTTATGCGTGTGAAGCAGATGCTCAAATTGCACCTTGTTCACACAAGTCTTGTTATGGCTGTATAACCAGGCACCTTTTGAACTGCCAGAGATGTTTCTTTTGCAACGCAACAGTGACAAGTGTTAGCAAAATTGTCAGCCAGGCTATTATTGGCAATCCACTTTTTAAGTTGGGCTTGTCCCAGACAATTCACCTACTTCTTGGAGGCCCAATTCTGTATTTTCTGAGAGAACCTGTCTGGCTATGGTTGATTCATCGGTGGTGTATGCTATGTTAA 3951 0.4128 MGEDSPRVGGFSAGLAVLLNGEDGKKNLPKTRLLSCCDDLGQQSVERTLEYVFGLPNRSLNSLKGPVDRGCIHSVIRNDFSRYNVKLSDSYSERDGVCYINGKNGNGPDIIGLEESSICGDIKVIKSPFLIESMAMFSSARASACVWKGKWMYEVMLETSGIQQLGWATLSCPFTDHKGVGDADDSYAYDGRRVSKWNKDAETYGQSWVVGDIIGCCIDLDRDEILFYRNGNSLGVAFQGIRKMGPGFGYYPAVSLSQGERCELNFGARPFKYPIEGYLPLQAPPSKNYFVTQLLQCWSRLLDMHSVERADHSLVQKLRRVKRFDSLEEIFHPASYAICEELFSILEADVGITEYMVWGPLLSFMFEVFGLHAPHDYSSLDKVVEVMLQFQGSHVLFEHILNALSCGCKIALLILTECPYSGSYSHLALACHLLRREELMVLWWKSPDFEFVFEGFLSQKSPNKHDLDFMIPTVWWPGSCEDASYEGNMMLTTTALSESVSKIEEKHRDLCRLVIQFIPPTNPPQLPGAVFRTFLRSLLLKNRGAERNIPPPGVSSNSVLVSIYTVVLHFLSEGFALGDICGWLKSCKTDVGFLHRGGEQSFPVHLFLKSDPHRADISRLGGSYSHLSKLHPTFDHEMEVIQWDEGCMDSEETRVTHSTRQKPCCCSSYDSDFTRNFKVPAKYLAKGSRGHCSSIPERPAHVTAECSDGSLNNEITDKPSPSDQSEPEYGYRQVHHMKSVPKDINISSTTLREEELLDALLWLYHVGLAPNFKQASYYMTHQTQSISLLEETDKQIRERACSEQLKHLKEVRNEYREEVIDCVRHCAWYRISLFSRWKQRGMYAMCMWVVQLLLVLSNMDSVFVYIPEYYLEALVDCFHVLRKSDPPFVPSTIFIKRGLTSFVTFVVTHFNDPRISSADLRDLLLQSISVLVQYREYLATFESNEAATQRMPKALLSAFDNRSWIPVTNILLRLCKGSGFSFSKNGESSSSSVLFQRLLREACISDEGLFSSFLNRLFNTLSWTMTEFSVSVREMQEKYQVIEFQQRKCCVIFDLSCNLARILEFCTREIPQAFLSGPDTNLRRLTELVVFILNHITSAADAEFFDLSLRRHSQSPEKINRGMILAPLVGIILNLLDATNSEEYRENNDLLDVFASMDCPDTVQYGFQYLLDYNWDGSFRGEAYVAKYEQLENFLSLLTCRTVLPHDKLDSVGDTDLDDSLCCICYACEADAQIAPCSHKSCYGCITRHLLNCQRCFFCNATVTSVSKIVSQAIIGNPLFKLGLSQTIHLLLGGPILYFLREPVWLWLIHRWCMLC 1316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01636 1316 Gene3D - 123 299 IPR043136 -
Phco7g01636 1316 FunFam E3 ubiquitin-protein ligase RKP 120 294 - -
Phco7g01636 1316 CDD SPRY_RNF123 139 267 IPR035773 -
Phco7g01636 1316 FunFam E3 ubiquitin-protein ligase RNF123 1214 1270 - -
Phco7g01636 1316 Pfam E3 ubiquitin-protein ligase RKP N-terminus 1 139 IPR045737 -
Phco7g01636 1316 PANTHER RING FINGER AND SRY DOMAIN-CONTAINING 30 1270 IPR045129 GO:0004842
Phco7g01636 1316 SUPERFAMILY RING/U-box 1216 1266 - -
Phco7g01636 1316 Pfam Ubiquitin elongating factor core 769 959 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Phco7g01636 1316 ProSiteProfiles Zinc finger RING-type profile. 1222 1256 IPR001841 -
Phco7g01636 1316 SMART SPRY_3 148 270 IPR003877 GO:0005515
Phco7g01636 1316 ProSiteProfiles B30.2/SPRY domain profile. 79 271 IPR001870 -
Phco7g01636 1316 MobiDBLite consensus disorder prediction 706 727 - -
Phco7g01636 1316 Pfam SPRY domain 150 268 IPR003877 GO:0005515
Phco7g01636 1316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1215 1270 IPR013083 -
Phco7g01636 1316 MobiDBLite consensus disorder prediction 705 730 - -
Phco7g01636 1316 CDD RING-HC_RNF123 1220 1263 - -
Phco7g01636 1316 SUPERFAMILY Concanavalin A-like lectins/glucanases 133 283 IPR013320 -
Phco7g01636 1316 Coils Coil 798 818 - -
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g01636 7 15844498 15854410 Phco7g01636 7 15844498 15854410 ECH