Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01602 ATGCTCCACAACAAGTCTTTCGTCAAGAAAACCAGGGCCGGCAAAGTCATGAAGCAAGTGCGGGAGCACTACCTGCGTGACGACATATACTGCGGCGCACCGTTTTGCACCGTTTGCGATACTTCGGGTGCTCGCCTCAACGCTTCCCCTTCAACCATTCTTGTCGTGGACACCAATGTCGTGCTCAATCAGATTGATTTGCTGGAGAATCAGGCATTCGATAACATTGTGGTGTTGTCCATTGTGTTGGAAGAGGTTAAGAACAAGAATATGGCTGTTTACAACCGTATAAGAGCTCTCTGTAGCAATTCCACTAAGAAGTTCTATGTTTTTTCCAATGAGTACCACAGGGATACATATGTTAAGGAAATGAGTGGTGAAACTAAAAATGATAGGAATGATAGAGCTATCCGAGTGGCTACTCAGTGGTATCAGAATCATCTTGGTGGTGCAGTAAAGGTTTTGCTTATTACTAATGATAGAGAGAACAAAAGGAAGGCTAGTGAAGAAGGCATTTTTGCTGAAACAGTCGAGTCATATGTCAAGTCTTTAGACCAACCTGATCTACTTGATCTTCTCGTGCTGCCTGCATCAGAAGACGTGAACATGGAAGAGGTTGAAGATCTTAGACCATCTAAGAGGAAAGTCATATATTCAGAGCATAAGCCAATGTCAGAAATTACTTCTGGTTTGCATCGTGGAATATATCATCAAGGGAAGCTTCGGGTAAACCGTTACAATCCATTTGAAGCATATGTTGGGAGGGAGAGCATTGGTGATGAAATAGTTATTTATGGGCGCTCAAATATGAATCGAGCTTTTGAGGGGGATATTGTGGCAGTTGAACTTCTGCCACAGGACCAGTGGCAAGAAGTCTCATCTCTATCTATAGCTGGTGAAGAAGATGAGAATGAGGATGAAGATGTCCATTTAGCTCCAAATAGTGCTGATGTTGCACCTAGGACTATTCCTCAGCAGGGTTCTTCTGGACAAGTAAATGCTGTACCCAGTCGTCCTTCTGGTCGTATTGTTGGTATTATAAAGAGGAACTGGCATTCGTATTGTGGATCTTTGGAGCCAATGCCTATGCCTGCAGGAAGTGGTGGAATTGCCCATGCCTTGTTTGTCTCCAAAGATCGCAGAATTCCCAAGATTCGAATCCAAACGCGCCAACTTGAGAACCTTTTGGATAAGAGGATTATTGTTGCAGTTGATTCTTGGGATCGTCAGTCTAGATATCCATCAGGCCATTATGTGCGAACTATAGGGGAGATAGGTGATAGAGATACTGAAAGTGAGGTGGTTTTGATAGAAAATGATATAAATACACGACCATTCTCTTCACAAGTGCTGGCATGCTTGCCACCATTGCCATGGTTGGTCTCTTCTGAAGATTTGTCCAATCCAATCAGGCAGGACTTGCGTCATCTGCTTGTGTTCAGTGTGGACCCTCCAGGCTGCAAGGATATTGACGATGCACTCCATTGTCACGCTCTTCCAAATGGAAACTTTGAAGTTGGAGTTCATATCGCTGATGTTACAAATTTTGTTCATCCTGGCACTCCACTTGATGATGAGGCTTCACAGAGGGGTACATCTGTCTACCTTGTGGAGCGGCGAATAGACATGCTTCCCAAACCTCTTACGGAGGATATATGTTCTCTTCGTTCTGATGTGGAAAGGCTAGCATTCTCTGTCATTTGGGAAATGACACCTGAAGCGGACATTATTTCCACCAGATATACAAAAAGTGTCATAAAGTCTTCTGCAGCATTGTCTTATGTTGAAGCACAAGCGAGGATGGATGATAGTCGACTGAGGGATCCCATTACTACAGATTTGAGGAATATGAATAGTTTAGCTAAGAAAATGAGATTGTGGCGCATTGAGAGAGGAGCTTTGACTCTAGCGTCGGCTGAAGTCAAATTTCAAATTGACACAGAGACTCATGACCCTCTTGATATTGGAATGTACCAGATCCGGGAGGCCAACCAAATGGTGGAGGAGTTTATGCTTGCTGCTAATGTTTCCGTTGCACAACAAATTCTTAAAAGTTTTTCGTTGTGCTCATTATTAAGGCGTCATCCAACACCAACCAGAGAGATGCTTGAACCCTTATTACAGACTGCTGCTGCAGTTGGCTTGCACTTGGATGTTTCATCATCAAAAGCATTGGCTGATTCTCTTGACCATGCTGTGGGCGATGATCCGTACTTCAATAAGTTAATCCGTATACTGGCAACTAGGTGCATGAGTCAGGCAGTTTATTTCTGCAGTGGGGATCTTAGCCCTCCAGAATATCATCATTATGGGCTTGCAGCTCCTTTGTATACCCACTTCACATCACCTATAAGAAGATACGCAGATGTCATTGTGCACAGGCTACTTGCTGCTTCTTTAGGAATATCAAAGTTACCGTCTGTATTTCAAGACAGACTCCAGCTCAGTAGTATTGCAGACAATTTAAATTATCGGCACAGGAATGCCCAGTATGCAGGGCGAGCATCTGTAGAGCTACATACTCTAATTTATTTCAGGAAGAGGCCTACAGACACGGAGGCTAGAATAGTCAAAATAAGATCTAATGGCTTTTTTGTGTTTGTTCCCAAATATGGCATAGAAGGACCTATATATTTGACAAAATCCGGAAAGGGAAATGGAGAATGGTACGTAGATGAGCAACAGCAGAAAATAAAAAGGATGGATGGTAGCCTTTCATACAGTGTTTTGCAGACAGTCCAAATTCACATGGAGGTTGTGGAGCCTCAGCCTAACCGCCCCAAACTTCAGCTTACTCTCATCTAG 2805 0.4342 MLHNKSFVKKTRAGKVMKQVREHYLRDDIYCGAPFCTVCDTSGARLNASPSTILVVDTNVVLNQIDLLENQAFDNIVVLSIVLEEVKNKNMAVYNRIRALCSNSTKKFYVFSNEYHRDTYVKEMSGETKNDRNDRAIRVATQWYQNHLGGAVKVLLITNDRENKRKASEEGIFAETVESYVKSLDQPDLLDLLVLPASEDVNMEEVEDLRPSKRKVIYSEHKPMSEITSGLHRGIYHQGKLRVNRYNPFEAYVGRESIGDEIVIYGRSNMNRAFEGDIVAVELLPQDQWQEVSSLSIAGEEDENEDEDVHLAPNSADVAPRTIPQQGSSGQVNAVPSRPSGRIVGIIKRNWHSYCGSLEPMPMPAGSGGIAHALFVSKDRRIPKIRIQTRQLENLLDKRIIVAVDSWDRQSRYPSGHYVRTIGEIGDRDTESEVVLIENDINTRPFSSQVLACLPPLPWLVSSEDLSNPIRQDLRHLLVFSVDPPGCKDIDDALHCHALPNGNFEVGVHIADVTNFVHPGTPLDDEASQRGTSVYLVERRIDMLPKPLTEDICSLRSDVERLAFSVIWEMTPEADIISTRYTKSVIKSSAALSYVEAQARMDDSRLRDPITTDLRNMNSLAKKMRLWRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAQQILKSFSLCSLLRRHPTPTREMLEPLLQTAAAVGLHLDVSSSKALADSLDHAVGDDPYFNKLIRILATRCMSQAVYFCSGDLSPPEYHHYGLAAPLYTHFTSPIRRYADVIVHRLLAASLGISKLPSVFQDRLQLSSIADNLNYRHRNAQYAGRASVELHTLIYFRKRPTDTEARIVKIRSNGFFVFVPKYGIEGPIYLTKSGKGNGEWYVDEQQQKIKRMDGSLSYSVLQTVQIHMEVVEPQPNRPKLQLTLI 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01602 934 Gene3D - 9 192 - -
Phco7g01602 934 SUPERFAMILY Nucleic acid-binding proteins 851 930 IPR012340 -
Phco7g01602 934 PANTHER RIBONUCLEASE 21 932 - -
Phco7g01602 934 Gene3D - 851 934 IPR012340 -
Phco7g01602 934 Pfam Rrp44-like cold shock domain 219 309 IPR033771 -
Phco7g01602 934 Gene3D - 207 312 - -
Phco7g01602 934 ProSitePatterns Ribonuclease II family signature. 769 793 IPR022966 -
Phco7g01602 934 SMART RNB_2 471 802 IPR001900 GO:0003723|GO:0004540
Phco7g01602 934 FunFam Exosome complex exonuclease RRP44 homolog A 851 934 - -
Phco7g01602 934 Gene3D - 351 426 - -
Phco7g01602 934 Pfam S1 domain 852 920 IPR033770 -
Phco7g01602 934 Pfam Dis3-like cold-shock domain 2 (CSD2) 373 440 IPR041505 -
Phco7g01602 934 FunFam Exosome complex exonuclease RRP44 homolog A 205 313 - -
Phco7g01602 934 SUPERFAMILY Nucleic acid-binding proteins 215 423 IPR012340 -
Phco7g01602 934 SMART PIN_9 52 165 IPR002716 -
Phco7g01602 934 FunFam Exosome complex exonuclease RRP44 homolog A 351 426 - -
Phco7g01602 934 FunFam Exosome complex exonuclease RRP44 9 192 - -
Phco7g01602 934 CDD PIN_Rrp44-like 9 180 - -
Phco7g01602 934 SUPERFAMILY Nucleic acid-binding proteins 429 847 IPR012340 -
Phco7g01602 934 Pfam PIN domain 54 177 IPR002716 -
Phco7g01602 934 SUPERFAMILY PIN domain-like 52 186 IPR029060 -
Phco7g01602 934 Pfam RNB domain 471 800 IPR001900 GO:0003723|GO:0004540
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01602 Phco-Chr7 15377344 15409594 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g01602 7 15377344 15409594 Phco7g01602 7 15377344 15409594 ECH