Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01517 ATGGATAATTCCACCCAAGACTCGCACCTTCGATCGGAGAACTCGGTGACCTATGAATCGCCCTACCCAATCTACGCCATGGCCTTCTCACCCTCCCACCCCCACCGTCTCGCCCTCGGAAGCTTCATCGAAAAATACACCAACCGCATCCACATCCTCTCCTTCCACCCCGACACCCTTTCCCTCACGCCACACCCCTCCCTCTCCTTCGACCACCCCTACCCTCCAACCAAGCTCATGTTCCACCCCGGCAAACCATCCCCCTCCTCCTCCTCCGACCTCCTAGCCACCTCCGGCGACTACCTCCGCCTCTGGGACGTCCGCGACAACTCCGTCGAGCCCCTCTCCCTCTTCAACAACAGCAAGACCAGCGAGTTTTGCGCGCCCCTCACCTCCTTCGACTGGAACGACATCGACCACAATCGCATCGGCACCTCCAGCATCGACACCACCTGCACCATCTGGGACATCGAACGCACCGTCGTCGAGACGCAGCTCATCGCCCACGACAAGGAGGTCTACGACATCGCCTGGGGTGAGGCAAGAGTCTTCGCCTCCGTCTCAGCCGACGGCTCCGTTCGAATCTTCGATTTGCGTGACAAAGAGCACTCCACCATCATCTATGAAAGCCCCCACCCCGACACCCCTTTGCTGCGTTTGGCTTGGAACAAGCAAGACCTCAGATACATGGCTACCATCTTGATGGACAGTAATAAAGTTGTGATCTTGGATATTAGGTCCCCCACTACCCCTGTGGCGGAGTTAGAGAAGCATCGTGGGAGTGTGAATGCCATTGCTTGGGCTCCTCATAGCTCCACGCATATTTGTTCTGCTGGGGATGATACTCAGGCTCTTATCTGGGAATTGCCCGCGCTGGCTGCTCCCACTGGGATTGATCCCATGTGCATGTATTCTGCTGGCTGTGAAATCAACCAGCTGCAGTGGTCCGCGGCTCAGCCTGATTGGATTGCTATTGCTTTTGCCAACAAGGTGCAGCTTTTGAAGCCTCTTGAATCTGTTGCTTCTTTGAGCATCACTCGTGATCTTCAACATTTATGTTTTGATCATCCCTTCAAATCGTTAAGCTTCCCATCACCAAGTCAAAGTCTACGTTCAAAGGTTCCTAGAAGGGTTAAAGCGTCTGGTGGTACAAGACCATCTGTCTTGACTAGAGCTTCAGGTTAG 1185 0.546 MDNSTQDSHLRSENSVTYESPYPIYAMAFSPSHPHRLALGSFIEKYTNRIHILSFHPDTLSLTPHPSLSFDHPYPPTKLMFHPGKPSPSSSSDLLATSGDYLRLWDVRDNSVEPLSLFNNSKTSEFCAPLTSFDWNDIDHNRIGTSSIDTTCTIWDIERTVVETQLIAHDKEVYDIAWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPHPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTTPVAELEKHRGSVNAIAWAPHSSTHICSAGDDTQALIWELPALAAPTGIDPMCMYSAGCEINQLQWSAAQPDWIAIAFANKVQLLKPLESVASLSITRDLQHLCFDHPFKSLSFPSPSQSLRSKVPRRVKASGGTRPSVLTRASG 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01517 394 ProSiteProfiles Trp-Asp (WD) repeats profile. 255 289 IPR001680 GO:0005515
Phco7g01517 394 FunFam WD repeat-containing protein LWD1 11 335 - -
Phco7g01517 394 ProSitePatterns Trp-Asp (WD) repeats signature. 275 289 IPR019775 -
Phco7g01517 394 PANTHER WD REPEAT CONTAINING PROTEIN 5 335 IPR045159 -
Phco7g01517 394 Pfam WD domain, G-beta repeat 166 197 IPR001680 GO:0005515
Phco7g01517 394 Pfam WD domain, G-beta repeat 251 287 IPR001680 GO:0005515
Phco7g01517 394 SMART WD40_4 159 197 IPR001680 GO:0005515
Phco7g01517 394 SMART WD40_4 63 106 IPR001680 GO:0005515
Phco7g01517 394 SMART WD40_4 248 288 IPR001680 GO:0005515
Phco7g01517 394 SMART WD40_4 111 156 IPR001680 GO:0005515
Phco7g01517 394 ProSiteProfiles Trp-Asp (WD) repeats profile. 166 206 IPR001680 GO:0005515
Phco7g01517 394 SUPERFAMILY WD40 repeat-like 21 295 IPR036322 GO:0005515
Phco7g01517 394 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 255 289 - -
Phco7g01517 394 Gene3D - 128 349 IPR015943 GO:0005515
Phco7g01517 394 MobiDBLite consensus disorder prediction 364 394 - -
Phco7g01517 394 Gene3D - 2 127 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01517 Phco-Chr7 14327823 14331248 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g01517 7 14327823 14331248 Phco7g01517 7 14327823 14331248 ECH