Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01441 ATGGAACGTTCTAGATCTAAGAGGAACTACTACTATGAACAAGACTATGATTCTGAGACCGTGGCCAGGACCAGGCCGCGCTATAACCACCACTACAGCGCCGGCGCCGGGAACCACCGCCACCGCGGCGGAGGCGCCCGCCACGCAAAGGCGCAGGACTCGCAACTAAGCGTCACAACCAGCTACCGCATTCTGTGCCACGACATGAAGGCTGGCGGCGTGATAGGAAAGTCCGGCAGCATTATAAAGTCCATTAGGCAGCACACCGGCGCGTGGATCAACGTGCACGAGCTCATGCCGGGGGACGAGGAGCGGATCATCGAGATTTCGGACACTCGGCGGCGAGACCCCGAGGGGAGAATGCCGTCATTCTCGCCGGCGCAGGAGGCCCTGCTGCTGATCCATGAGCGGATTCTGGAGAGCGACGCTGCGTTCGGGGTGGCGGAGGAGGAGGAAGAGTACGGCGGGAGGGGTGGAGGCGGTGGGAGGGACCGGGTGGCGACGAGGCTGGTGGTATCGAGAATGCATGTTGGGTGTTTGTTGGGTAAAGGGGGGAAGATTATTGAACAAATGAGGATGGAAACCAAGACGCAAATTAGGATACTCCCTAGAGATCACAACCTTCCCCGTTGTGTTTCCATGTCTGAAGAGATTGTTCAGGTTGTTGGTGATGTAAGTGCTGTAAAGGATGCTATAGCTAATATATCATCACGGTTGAGGGAGAGCCAGCACCGTGACCGAAGTCATTTCCATGGGCGTGTACATTCACCAGAGCGATTTTTCTCTCCCGACAATGATTATATTCCTCATGTGACTAGTGGATCTCGTAGATCATCTGTGGATGGGGCCGCTTTTGGATCACGTTCTAACACAACTAGCAGAAACAATAACCACTCTGCAATGAATTATTTGATGGAGCCTGGGGCTGCTCCTGTTTCCGATGATGTGCATGGCTTCTATGGGGAGGAACTGGTTTTCCGTGTACTCTGTCCTGTTGAGAGAGTTGATCGTATCATTGGGGAATCAGGTGGAATTGTAGAGTTCCTTCAGAATGAGGTTGGTGTAGATGTTAAGGTCACTGAACCTGTTGGTGGTTCGGATGAACAGATAGTTATCATTACTTCAGAGGAGGGTCCTGATGATGAGCTGTTCCCAGCTCAAGAAGCTTTGTTACATATACAAACCCGCATTGTCGATCTTATTCTAGAGAAAGACAATACCATAACCACCAGGCTTGTTGTCCCATCCAGCGAAATTGAATGCTTGGACGGAAAGGATGCTTCACTTTCAGAAATAAGGAGGTTAACTGGTGCTAATATTCAAATTTTGCCTAGAGATGAGCTACCTCCCTGTGTTGCAAAAACCGATGAGCTTGTACAGATTGTAGGAGAGATTAAAGCAGCCCGAGATGCTGTTGTGGAGGTGACATCAAGATTAAGAAGTTACTTGTACAGGGATTTCTTTCAAAGGGACATAGTACCACCAGTTGCCTTGCCTGGTGTGGAGGCATCTTCTTCCAATACTTTAGTTTCAGTTACTGAAAATCTCACGACCTATCAAAATATGCAAACTGTTGCAGCAGCCTTTCCATCGAAGGAGCCTGGAGGAACTAGCACTGAGATAGGAAAGCAGAAAGAAAGTGATCGCCGCGATGATGTGCTTAGTGGTTTAAATAGGATTGCTGTGCCTCTTGTCACAAGGAGTACACTTGAAGTTGTTATACCAGAGTATGCAGTACCAAAGCTTATAGCAAAATCCAAAAGCAAGCTTGCCCAAATAAGTGAGTTATCAGGAGCCAATGTAACACTAGTAGAGGATAGACCAGACGTGACACAGAAGATTATTCAGATATCTGGAACTCCAGAGCAGGCAGAGAGAGCCCAGAGCTTGCTCCAAGGATTTATTTTGAGCACACAAGAAGACGGCCCTTAA 1932 0.4912 MERSRSKRNYYYEQDYDSETVARTRPRYNHHYSAGAGNHRHRGGGARHAKAQDSQLSVTTSYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHELMPGDEERIIEISDTRRRDPEGRMPSFSPAQEALLLIHERILESDAAFGVAEEEEEYGGRGGGGGRDRVATRLVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHNLPRCVSMSEEIVQVVGDVSAVKDAIANISSRLRESQHRDRSHFHGRVHSPERFFSPDNDYIPHVTSGSRRSSVDGAAFGSRSNTTSRNNNHSAMNYLMEPGAAPVSDDVHGFYGEELVFRVLCPVERVDRIIGESGGIVEFLQNEVGVDVKVTEPVGGSDEQIVIITSEEGPDDELFPAQEALLHIQTRIVDLILEKDNTITTRLVVPSSEIECLDGKDASLSEIRRLTGANIQILPRDELPPCVAKTDELVQIVGEIKAARDAVVEVTSRLRSYLYRDFFQRDIVPPVALPGVEASSSNTLVSVTENLTTYQNMQTVAAAFPSKEPGGTSTEIGKQKESDRRDDVLSGLNRIAVPLVTRSTLEVVIPEYAVPKLIAKSKSKLAQISELSGANVTLVEDRPDVTQKIIQISGTPEQAERAQSLLQGFILSTQEDGP 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01441 643 ProSiteProfiles Type-1 KH domain profile. 165 235 - -
Phco7g01441 643 SMART kh_6 58 139 IPR004087 GO:0003676
Phco7g01441 643 SMART kh_6 322 395 IPR004087 GO:0003676
Phco7g01441 643 SMART kh_6 406 480 IPR004087 GO:0003676
Phco7g01441 643 SMART kh_6 164 240 IPR004087 GO:0003676
Phco7g01441 643 SMART kh_6 566 636 IPR004087 GO:0003676
Phco7g01441 643 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 400 488 IPR036612 GO:0003723
Phco7g01441 643 Gene3D K Homology domain, type 1 52 164 IPR036612 GO:0003723
Phco7g01441 643 MobiDBLite consensus disorder prediction 272 297 - -
Phco7g01441 643 ProSiteProfiles Type-1 KH domain profile. 323 390 - -
Phco7g01441 643 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 56 110 IPR036612 GO:0003723
Phco7g01441 643 Gene3D K Homology domain, type 1 566 638 IPR036612 GO:0003723
Phco7g01441 643 Gene3D - 322 483 - -
Phco7g01441 643 ProSiteProfiles Type-1 KH domain profile. 59 131 - -
Phco7g01441 643 Pfam KH domain 62 110 IPR004088 GO:0003723
Phco7g01441 643 Pfam KH domain 168 236 IPR004088 GO:0003723
Phco7g01441 643 Pfam KH domain 326 378 IPR004088 GO:0003723
Phco7g01441 643 Pfam KH domain 409 474 IPR004088 GO:0003723
Phco7g01441 643 Pfam KH domain 569 632 IPR004088 GO:0003723
Phco7g01441 643 ProSiteProfiles Type-1 KH domain profile. 567 631 - -
Phco7g01441 643 CDD KH-I_PEPPER_rpt1_like 59 132 - -
Phco7g01441 643 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 559 637 IPR036612 GO:0003723
Phco7g01441 643 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 161 246 IPR036612 GO:0003723
Phco7g01441 643 CDD KH-I_PEPPER_rpt2_like 409 480 - -
Phco7g01441 643 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 52 272 - -
Phco7g01441 643 CDD KH-I_PEPPER_rpt1_like 323 391 - -
Phco7g01441 643 Gene3D K Homology domain, type 1 165 244 IPR036612 GO:0003723
Phco7g01441 643 CDD KH-I_PEPPER_rpt2_like 168 240 - -
Phco7g01441 643 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 315 380 IPR036612 GO:0003723
Phco7g01441 643 MobiDBLite consensus disorder prediction 34 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01441 Phco-Chr7 13409302 13414263 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g01441 7 13409302 13414263 Phco7g01441 7 13409302 13414263 ECH