Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01438 ATGATTGATCTCTTCTGTAAAGGAATAAAGGTGCTTGATCATCTTAAAGTTGATACTGAGGAGGAGTATATTGAGATAAAAAAATTCCAAGATCAAATTCTAGTAATGTTTGATCCTAGGAGGAAGAGGAAGACGATGAAAGGTTCATGTCTTCTTCCTTCGCACTCTTTCACCGGAATCAGGACAAGCAAAGAGCTTCGGCATATGCTATCATTGTGTGAGTTGAAAAGCATAGCATGCTTCTCGGTTTGTAATCAAAGACAAAATTACAATCAAAAGCTTTACATTATTCCCATTAGGACTGCTTCTGTTCGGGTCCGCATCGCAAGATCTTCAGTTGGGTCATTGGAATGTGGTGGGACAGGCCCACATAGTGATGCTTATTCAGGATTTTCATCTCCAAATGACCATCAGAGAATTGGCAGTTTAGAAAGAGAATTGGAAGAGTTATTTGATGAAGTGAAGAGAATGATTAGGATGGGAAACAAAAATGATGCTATAGACCTGCTAACTGCAAATTACGAAGCCGTCAAAGAGAGCCTGAATGCAGGTACTAAAGGCATAGAAGAAGCTGCAATTTTGGATGTCATAGCACTAGGTTACATGGCTGTTGGAGACTTAAAATTTGTTGGATCTTTGTTGGATATGATGAAAGAAGTTGTTGACAATTTGAAGGATGATGCACCTCGTCTGGATTCAATACTTATGCATATGGGAAGTATGTACGCAACATTGAACATGTTTGAAAAATCATTGGACACATATCAGAGGGCTCTCTACATTATGGAGGGGACCTACGGTAAGGATAGTACTTTACTTGTCACGCCTTGTTTGGGCATGGCAAAAGTTCTTGGCTCTTTCGGAAAATCAACAAAAGCCATAGAGATTTACCAGCGTGTGATCACTCTTTTGGGATCAAGTAGAGGTGCCCAAAGTAAGGATTTGGTTGTACCGTTACTTAGCCTTGGCAATCTTTTACTCAAAGAAAGGAGAGCCAATGACGCTGAAACTCATTTTACTAGAGTTCTCGACATATACACTAAATTATATGGACAAAATGATGGAAGAATTGGGATAGCTATGAGTTCCCTAGCCCGAGTTAAGAGTGCTCAAGGGAAATCAGATGAAGCAATACAATTGTTTAAACGTGCTATTCAGGTTATGAAAGATTCAAATTACTTGTCACCTGATGACAGTATAATGGAAAAGATGAGGGTGGATCTATCTGAATTACTTCATGCCGCTGGGAGAGGACAAGAAGGCAGAGAGCTATTAGAGGAGTGTTTGTGGATCACTGAGAGGCACAAAGGAAAGGAGCACCCCCTCCTGGTGACGCACATGATAAATCTTGCAACTTCATATTCACGGTCTAAGAATTATGCAGATGCCGAGCACCTGTTGAGAAGAAGTTTGCAAATCCTGATAAAGCATAAGGGAACTGATGACCAGTCTATCAGCTTTCCTATGTTACATCTTGCAGTTACACTCTACCATTTGAAAAATGATGAAGAAGCAGAGAAACTTGCCCTGGAGGTTTTGCGGATCCGTGAGAAGGCCTTTGGAAAAAATTCCCTTCCTGTTGGGGAGGCTTTGGATTGTTTGGTGTCTATTCAAACCAGACTTGGTAAGGATGACAGTGAGTTGCTCGAGCTGCTTAGAAGGATCTTGAGTATCCAAGAAAGAGAATTTGGATATGAAAGTGAGGAGGTTTTGGTTAGCCTGAAAAAAATTGTATACTACTTGGATAAACTAGGGAAGAAAGATGAAAAGCTTACCCTTCATAGAAGGTTGTCTGTGCTTAGGAAAAAGTATAACCAAATGGTTAACTATTAA 1833 0.4015 MIDLFCKGIKVLDHLKVDTEEEYIEIKKFQDQILVMFDPRRKRKTMKGSCLLPSHSFTGIRTSKELRHMLSLCELKSIACFSVCNQRQNYNQKLYIIPIRTASVRVRIARSSVGSLECGGTGPHSDAYSGFSSPNDHQRIGSLERELEELFDEVKRMIRMGNKNDAIDLLTANYEAVKESLNAGTKGIEEAAILDVIALGYMAVGDLKFVGSLLDMMKEVVDNLKDDAPRLDSILMHMGSMYATLNMFEKSLDTYQRALYIMEGTYGKDSTLLVTPCLGMAKVLGSFGKSTKAIEIYQRVITLLGSSRGAQSKDLVVPLLSLGNLLLKERRANDAETHFTRVLDIYTKLYGQNDGRIGIAMSSLARVKSAQGKSDEAIQLFKRAIQVMKDSNYLSPDDSIMEKMRVDLSELLHAAGRGQEGRELLEECLWITERHKGKEHPLLVTHMINLATSYSRSKNYADAEHLLRRSLQILIKHKGTDDQSISFPMLHLAVTLYHLKNDEEAEKLALEVLRIREKAFGKNSLPVGEALDCLVSIQTRLGKDDSELLELLRRILSIQEREFGYESEEVLVSLKKIVYYLDKLGKKDEKLTLHRRLSVLRKKYNQMVNY 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01438 610 ProSiteProfiles TPR repeat profile. 358 391 IPR019734 GO:0005515
Phco7g01438 610 SUPERFAMILY TPR-like 234 473 IPR011990 GO:0005515
Phco7g01438 610 SUPERFAMILY TPR-like 407 542 IPR011990 GO:0005515
Phco7g01438 610 Gene3D Tetratricopeptide repeat domain 401 608 IPR011990 GO:0005515
Phco7g01438 610 Gene3D Tetratricopeptide repeat domain 210 400 IPR011990 GO:0005515
Phco7g01438 610 Coils Coil 140 160 - -
Phco7g01438 610 ProSiteProfiles TPR repeat profile. 232 265 IPR019734 GO:0005515
Phco7g01438 610 Pfam MalT-like TPR region 233 513 IPR041617 -
Phco7g01438 610 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) 104 593 - -
Phco7g01438 610 SMART tpr_5 444 477 IPR019734 GO:0005515
Phco7g01438 610 SMART tpr_5 232 265 IPR019734 GO:0005515
Phco7g01438 610 SMART tpr_5 486 519 IPR019734 GO:0005515
Phco7g01438 610 SMART tpr_5 274 307 IPR019734 GO:0005515
Phco7g01438 610 SMART tpr_5 316 349 IPR019734 GO:0005515
Phco7g01438 610 SMART tpr_5 358 391 IPR019734 GO:0005515
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g01438 7 13380788 13386572 Phco7g01438 7 13380788 13386572 ECH