Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01430 ATGGACTCTCTACAACTCCATGCTCTTCTACTTCTGCATCCATGCGCATCATCACCATCACTAAGGCAACTGCGTTTCCCTCTTCCGTTAATACGAAATTCTAGAAATCGCAACTTCAGATTGTTTTCTGCTCACAATGGCGGCGCTGCTTCGCAAGACGGTCCCTTCGCTTTTGAAGAAAAAGTTGTCTCTTCCCCCAAAGATGATCGAGGTCTCGTGCTGGCCAGAGAAACCGACGATTTTGGCTATCTCGTTGGCTTTCGCTTGATTCCGGAGTCAGGTCTCGAAGAGTTGATGAGTGTGCAACATGCAATAGCTGAGGAAGACTCTAGTAGCGACGAGGCTAAAAAACCTGGGCTTAAGGATACAGGTGAAGAGGAAGCTGAGACTAGAGTGTCCTACAACATTATTTTTGTGACTGCTGAAGCTGCGCCGTATTCCAAGACAGGTGGTCTTGCTGATGTTTGTGGCTCTTTGCCAATTGCTCTGGCGGCTCGCGGGCACCGTGTGATGGTAGTCACGCCCAGATACATTCATGGTACTTCTGAGGATGCTAAGTTTGCTGGGGCAGTTGATCTGGCTCAACGCACCAAAGTGTCGTGCTTTGGAGGTGCTCAAGAAGTTGGCTTTTTCCATGAGTATAGGGAAGGGGTTGATTGGGTATTCGTGGACCACCCCTCGTTCCATAGACCAGGGAATCCGTATGGGGACAAGTTTGGGACTTTTGGGGATAATCAGTTTCGGTTCACTTTACTTTCCCATGCAGCGTGTGAAGCTCCATTGGTGCTTCCATTGGGGGGGTTCACTTACGGAGAAAAATGTTTATTCCTTGCTAATGATTGGCATGCCAGCCTAGTTCCAGTACTTTTGGCAGCAAAGTATCGTCCACATGGGGTATATACAGATGCTCGCAGTATATTAGTGATACATAATATAGCACATCAGGGAGTGGAACCTGCAATTACATACAGTAGTTTGGGGCTACCTACAGAATGGTATGGAGCACTAGAATGGGTGTTTCCTACGTGGGCAAGGACACATGCTCTTGACACAGGTGAAGCTGTCAACTTTCTAAAAGGTGCTGTTGTTACAGCTGACCGGATTGTGACAGTAAGCAAGGGCTATTCCTGGGAGATAACTACAAGTGAAGGTGGAAATGGTCTACATGAATTATTAAATGGTCGAAAAAGTATTCTCAATGGGATCACAAATGGAATTGACGTCACTGAATGGGACCCATCATGTGATAAACATATTGCTTTCAATTACTCTGTTGATGACCTTTCCGGGAAGGCCAAATGCAAGTATGCTTTGCAGCAGGAATTGGGTCTTCCAGTGAGGCCTGATTGTCCATTGATTGGGTTCATTGGAAGACTGGACTACCAGAAAGGTATTGACTTGATCCGCTTGGCAATGCCTGAGCTCATGGAAGCTGATGTTCAGTTTGTAATGCTTGGGTCAGGAAACCCTATTTATGAAGACTGGATGAGAGCAACAGAGTCCGTTTATAGAGATAAATTTCGGGGTTGGGTGGGATTTAATGTTCCTATATCTCATAAAATAACTGCAGGCTGTGATATATTGTTGATGCCATCTGCGTTCGAGCCCTGTGGACTGAATCAGTTGTATGCAATGAGATATGGAACTATACCCGTAGTTCATGAAACTGGGGGCCTAAGAGATACTGTTCATAATTTTAATCCATATACTGAAGACAGCAAAACTGAAAGCACTGGGTGGACGTTTTCTCCACTAACAAAGGAGAGCATGTTAGCGGCTCTAAGATATGCCATTCAGACATACAATGAACACAAGTCTTCGTGGGAGGGATTGATGCTAAGAGGCATGACAAAAGATTACACATGGGTAAATGCAGCTACTCAATACGAGCAAATCATTGAGTGGGCATTCATCGACCCACCCTATTGCTGA 1932 0.4555 MDSLQLHALLLLHPCASSPSLRQLRFPLPLIRNSRNRNFRLFSAHNGGAASQDGPFAFEEKVVSSPKDDRGLVLARETDDFGYLVGFRLIPESGLEELMSVQHAIAEEDSSSDEAKKPGLKDTGEEEAETRVSYNIIFVTAEAAPYSKTGGLADVCGSLPIALAARGHRVMVVTPRYIHGTSEDAKFAGAVDLAQRTKVSCFGGAQEVGFFHEYREGVDWVFVDHPSFHRPGNPYGDKFGTFGDNQFRFTLLSHAACEAPLVLPLGGFTYGEKCLFLANDWHASLVPVLLAAKYRPHGVYTDARSILVIHNIAHQGVEPAITYSSLGLPTEWYGALEWVFPTWARTHALDTGEAVNFLKGAVVTADRIVTVSKGYSWEITTSEGGNGLHELLNGRKSILNGITNGIDVTEWDPSCDKHIAFNYSVDDLSGKAKCKYALQQELGLPVRPDCPLIGFIGRLDYQKGIDLIRLAMPELMEADVQFVMLGSGNPIYEDWMRATESVYRDKFRGWVGFNVPISHKITAGCDILLMPSAFEPCGLNQLYAMRYGTIPVVHETGGLRDTVHNFNPYTEDSKTESTGWTFSPLTKESMLAALRYAIQTYNEHKSSWEGLMLRGMTKDYTWVNAATQYEQIIEWAFIDPPYC 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01430 643 Hamap Glycogen synthase [glgA]. 134 636 IPR011835 GO:0004373
Phco7g01430 643 PANTHER GRANULE-BOUND STARCH SYNTHASE 1, CHLOROPLASTIC/AMYLOPLASTIC 113 642 - -
Phco7g01430 643 MobiDBLite consensus disorder prediction 107 127 - -
Phco7g01430 643 Pfam Starch synthase catalytic domain 135 393 IPR013534 -
Phco7g01430 643 FunFam Starch synthase, chloroplastic/amyloplastic 135 420 - -
Phco7g01430 643 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 133 635 - -
Phco7g01430 643 CDD GT5_Glycogen_synthase_DULL1-like 135 635 - -
Phco7g01430 643 Gene3D Glycogen Phosphorylase B; 154 632 - -
Phco7g01430 643 Pfam Glycosyl transferases group 1 450 602 IPR001296 GO:0016757
Phco7g01430 643 MobiDBLite consensus disorder prediction 106 127 - -
Phco7g01430 643 NCBIfam glycogen/starch synthase, ADP-glucose type 135 633 IPR011835 GO:0004373
Phco7g01430 643 Gene3D Glycogen Phosphorylase B; 408 619 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01430 Phco-Chr7 13292985 13300800 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g01430 7 13292985 13300800 Phco7g01430 7 13292985 13300800 ECH