Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01426 ATGAATTATTCATTGGTGGAAAGGGGTTTTTCTGAGTTGATGGACTTGGAAAGCGTTGAGTGTGTGTCATCCTCGGATGGCAGGGAAGTGGATGAGATCCACACCAATCATCATCACTCTGAGTTTTCTTCCACAAAGCCTCGCAATGGAGGCACCAATAACGTTAATTCTGTGGGCTCCACCGCCCTTGCTCCGGCAACCAGCGTCCATGAGTTGCTGGAATGTCCTGTGTGTACTAATTCAATGTACCCTCCAATTCACCAGTGCCACAATGGCCACACACTCTGTTCCACGTGTAAAACAAGGGTGCATAACCGATGTCCCACTTGTAGACAAGAGCTTGGAGATATTAGGTGTTTGGCACTGGAAAAGGTGGCTGAATCACTTGAGCTACCTTGCAAGTACTACTCCCTTGGATGTTCAGAAATCTTTCCGTATTACAGCAAGCTTAAGCATGAGACAGTGTGTAATTATAGACCATATAGTTGCCCTTATGCTGGATCAGAGTGTTCTGTTGTGGGGGATATTCCCTTCCTTGTTGCTCATTTAAGGGACGATCATAAAGTGGACATGCACACCGGATGCACATTCAACCATCGTTATGTGAAGTCAAATCCGCGTGAAGTGGAGAATGCAACCTGGATGCTCACAGTGTTTCATTGTTTTGGCCAATATTTCTGCCTTCATTTTGAAGCTTTCCAGCTTGGCGTGGCACCTGTTTACATGGCATTCCTTCGTTTTATGGGTAATGAGAATGAGGCTCGGAATTATAGCTATAGCCTAGAGGTTGGGGCGAATGGTAGAAAACTGATTTGGGAGGGTACGCCACGGAGTGTTCGAGATAGCCACCGTAAAGTCAGGGATAGCCATGATGGGCTCATTATTCAAAGAAACATGGCTCTATTTTTCTCTGGTGGGGACAGAAAGGAACTGAAACTCAGAGTTACAGGAAGAATATGGAAGGAGCAACAGAATTCGGATGCTGGTGTGTGCATGCCAAATCTCTGTAGTTGA 1014 0.4586 MNYSLVERGFSELMDLESVECVSSSDGREVDEIHTNHHHSEFSSTKPRNGGTNNVNSVGSTALAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCSEIFPYYSKLKHETVCNYRPYSCPYAGSECSVVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGVAPVYMAFLRFMGNENEARNYSYSLEVGANGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNSDAGVCMPNLCS 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01426 337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 181 IPR013083 -
Phco7g01426 337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 117 IPR013083 -
Phco7g01426 337 Pfam Seven in absentia protein family 117 316 IPR018121 GO:0005737|GO:0006511|GO:0007275
Phco7g01426 337 SUPERFAMILY TRAF domain-like 128 320 - -
Phco7g01426 337 MobiDBLite consensus disorder prediction 45 59 - -
Phco7g01426 337 CDD Sina 189 317 - -
Phco7g01426 337 SUPERFAMILY RING/U-box 66 114 - -
Phco7g01426 337 FunFam E3 ubiquitin-protein ligase SINAT5-like 184 316 - -
Phco7g01426 337 ProSiteProfiles Zinc finger RING-type profile. 75 111 IPR001841 -
Phco7g01426 337 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 50 322 - -
Phco7g01426 337 CDD RING-HC_SIAHs 73 111 - -
Phco7g01426 337 ProSiteProfiles Zinc finger SIAH-type profile. 128 188 IPR013010 GO:0008270
Phco7g01426 337 FunFam E3 ubiquitin-protein ligase SINAT3 127 183 - -
Phco7g01426 337 FunFam E3 ubiquitin-protein ligase SINAT3 24 126 - -
Phco7g01426 337 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 182 316 IPR008974 GO:0005515
Phco7g01426 337 MobiDBLite consensus disorder prediction 37 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01426 Phco-Chr7 13240118 13246085 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g01426 7 13240118 13246085 Phco7g01426 7 13240118 13246085 ECH