Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01424 ATGGGCTGCTGCTGTTCAACTTCAAAGAGAACCGGAACACCAGGTTATGAGGAACCCACCGTTCTTGCATCTCAGACACCTTGTGAGTATCATGATCCATCATTGAATGTTACTGTTAGTGAAGTAGAAGCCTTGCATGAACTCTACAAGAAGTTGAGCAATTCAATTATTGAAGACAATCTTATTCACAGGGAAGAATTCCAGTTGGCACTATTCAGGAATAAAAACAAGAAAAATCTGTTTGCAGATAGGATTTTTGACTTGTTTGATCTCAAGCGCAATGGGGTCATTGAGTTCGGGGAATTTGTTCGATCATTGGGAGTTTTTCACCCAAATGCACCTTTAGAAGACAAAATTACTTTTGCTTTTAGGTTGTATGATCTGAGGCAGACAGGGTTTATTGAAAGAGGAGAGTTGAAGGAGATGGTATTGGCACTTCTGCACGAGTCGGATCTTGAGCTTTCAGATGATATGATTGAAAGCATTGTCGACAAGACTTTTAGTGATGCTGATATAAATGGTGATGGAAAGATCGATCAAGATGAGTGGAAAGCATTTGTGTCCAAACATCCATCCTTGATAAAGAATATGACTCTTCCATATCTAAAGGATATTACACTGGCATTTCCCAGTTTTGTTGTAAGAACAGAAATTGAAGAGTCCGATATGTGA 672 0.3914 MGCCCSTSKRTGTPGYEEPTVLASQTPCEYHDPSLNVTVSEVEALHELYKKLSNSIIEDNLIHREEFQLALFRNKNKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPNAPLEDKITFAFRLYDLRQTGFIERGELKEMVLALLHESDLELSDDMIESIVDKTFSDADINGDGKIDQDEWKAFVSKHPSLIKNMTLPYLKDITLAFPSFVVRTEIEESDM 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01424 223 ProSiteProfiles EF-hand calcium-binding domain profile. 158 193 IPR002048 GO:0005509
Phco7g01424 223 Pfam EF-hand domain pair 62 104 IPR002048 GO:0005509
Phco7g01424 223 Gene3D - 33 221 - -
Phco7g01424 223 PRINTS Recoverin family signature 85 106 - -
Phco7g01424 223 PRINTS Recoverin family signature 178 198 - -
Phco7g01424 223 PRINTS Recoverin family signature 132 150 - -
Phco7g01424 223 Pfam EF-hand domain pair 117 186 IPR002048 GO:0005509
Phco7g01424 223 ProSiteProfiles EF-hand calcium-binding domain profile. 114 149 IPR002048 GO:0005509
Phco7g01424 223 ProSiteProfiles EF-hand calcium-binding domain profile. 77 112 IPR002048 GO:0005509
Phco7g01424 223 SMART efh_1 81 109 IPR002048 GO:0005509
Phco7g01424 223 SMART efh_1 118 146 IPR002048 GO:0005509
Phco7g01424 223 SMART efh_1 162 190 IPR002048 GO:0005509
Phco7g01424 223 ProSitePatterns EF-hand calcium-binding domain. 171 183 IPR018247 -
Phco7g01424 223 SUPERFAMILY EF-hand 35 211 IPR011992 -
Phco7g01424 223 FunFam calcineurin B-like protein 3 30 220 - -
Phco7g01424 223 CDD EFh 118 188 IPR002048 GO:0005509
Phco7g01424 223 PANTHER CALCINEURIN B 2 220 IPR045198 GO:0005509|GO:0019722|GO:0019900
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01424 Phco-Chr7 13200182 13202475 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g01424 7 13200182 13202475 Phco7g01424 7 13200182 13202475 ECH