Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01409 ATGAAAATCCCCAATCCCATACTCACTCTCTTCATCCTCTTCAACCCTCCCCTAGTACTGGCAATTATAGAAACATGTTTAGAGAGCGTTTGTCAGGATGGTGAGCCACAAATCCGATTCCCCTTCCTCATAAAAGGAAAACACGCAGAACCATGCGGATACCCAGGGTTCATGGTCTCCTGCACCCAGAACTCCCAAACACTCCTCAACCTACCAAATTGGGGTCCACTCAAAATCCGAACTATAAACTACGCCGCGCAGCAACTCTGGGTGAACGATCCCAACAACTGCCTCCCCAAACGCCTCATCTCTCTCAATCTCTCCACCTCTCCCTTCCGCGCCGTTTACCTCCAGCAGTTCACCTTCTTCAACTGCTCCGCCAATTTAGAGAACCTCGTTCATCGATACCGCCCCATAGGTTGTCTCAGCGATTCTCCCAAGTACGTCGTTTTCGCGACGCCTTCTACTACTGTGGTTGGCCACTTGTCTTCTCTGTGTCATCTAGTGGCGAGGGTGAAGGTGCCGGTGCAGTCACCGTTTTACGATCAAGTCACGTCGTCGGAACTCGGCGAGGATCTGCGTCTTTCGTGGGATTCGCCGGCGTGTGGGAGGTGCGAGTCCCGCGGTGGCCGGTGCGGCTTCAAGAGTGACGACACTTTTGAGCTTGACTGCTCTGGTGTCCCTTCGAAAGGTAGGTCCCGGATTTCCCGTTACGCCATAGCCATATGCATAGGGGTACCAGCTATGTTATGCTTCTTTGGAGTATTGAGTTGCATCTGCAGGTGGCTGAAAGTGGGGAACCACGATGGTCCTTGGGGTCACGAAAGTGTGGCAGATTTTGAGGCTCTTGTGGGCTCACGGCCCACAACAGTATCGGGCCTGGACAGACCAACAATCGAATCCTACCCAAAAATAGTTATAGGTGAGAACAGACGGTTACCGAAGAAGGGTGAGAAAAGATGCTCAATATGTCTCTCAGAGTACATGCCAAAGGAGACAGTGAAAAGCATACCGGAATGTGGACACTGCTTTCATGCACAATGCATCGATGAATGGCTTCCACTGAACGCCTCCTGCCCAATTTGCAGAACTTCTCCCCGAAAGTTTCCACAACCGCGTGCTCGATCATCACCATAG 1137 0.5172 MKIPNPILTLFILFNPPLVLAIIETCLESVCQDGEPQIRFPFLIKGKHAEPCGYPGFMVSCTQNSQTLLNLPNWGPLKIRTINYAAQQLWVNDPNNCLPKRLISLNLSTSPFRAVYLQQFTFFNCSANLENLVHRYRPIGCLSDSPKYVVFATPSTTVVGHLSSLCHLVARVKVPVQSPFYDQVTSSELGEDLRLSWDSPACGRCESRGGRCGFKSDDTFELDCSGVPSKGRSRISRYAIAICIGVPAMLCFFGVLSCICRWLKVGNHDGPWGHESVADFEALVGSRPTTVSGLDRPTIESYPKIVIGENRRLPKKGEKRCSICLSEYMPKETVKSIPECGHCFHAQCIDEWLPLNASCPICRTSPRKFPQPRARSSP 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01409 378 SMART ring_2 321 362 IPR001841 -
Phco7g01409 378 Pfam Wall-associated receptor kinase galacturonan-binding 26 93 IPR025287 GO:0030247
Phco7g01409 378 ProSiteProfiles Zinc finger RING-type profile. 321 363 IPR001841 -
Phco7g01409 378 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 285 367 IPR013083 -
Phco7g01409 378 CDD RING-H2_EL5-like 320 363 - -
Phco7g01409 378 SUPERFAMILY RING/U-box 316 366 - -
Phco7g01409 378 Pfam Wall-associated receptor kinase C-terminal 165 224 IPR032872 -
Phco7g01409 378 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 11 366 IPR046948 -
Phco7g01409 378 Pfam Ring finger domain 320 363 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01409 Phco-Chr7 12926372 12928448 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g01409 7 12926372 12928448 Phco7g01409 7 12926372 12928448 ECH