LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco7g01383	ATGGAAGAGAGTATCCTATGCAAACACACACTGCATCACACCGTCACCAAGAAGCTCCTCTCACCCAAAAAATCCCAAACCAATCCAACCACAGACCGCAGGATAGTCCGGATATCATACACTGATCCGGACGCCACCGACTCTTCCAGCGACGACGAACCCTTCCCCTTCGTCCGCCAAAGAATCAAGCGCTACGTCAACCAGATTGAGATAGAAACCGCCACCACCGCCGCCCCCAACGCCCTTGCCAATGCTCGCAAGAGGCCCGCCGCCGAGCCATGCCGCCGCCAAGTCAAGCTCCACTCCGGCAAGAAGTTCCGCGGCGTCCGGCAGAGACCGTGGGGGAAATGGGCGGCGGAGATTCGAGATCCGGCCAGAAGGGTGCGTCTCTGGTTGGGAACTTACGACACTGCCGAAGAAGCCGCCATGGTCTACGACAATGCCGCTATTAGGCTTCGCGGCCCGGACGCCTTGACAAACTTCGTAACGCCGCCGCTAAAAGAACCTCCGCCGGCTGTGGCGGCGGACGTTCCGGAATTGAAGGTCGGCGTCCCTGAAGAGGCGTCTGGGTCCGCGTACGGGTACGACTCCGGCGACGATCACTGCCACCATAACCTTGCCTCTCCCACTTCGGTGCTCCACTTCCGAAGCAACTCGAGCGAAGAGAATTCAGAGAAAACGGAGGAAGTGTTGAGAGAGTGCCAGGGCGAGACTGAAACGAGTTTGTTCGACGAAACGGGGGAGTTTTTGGCGCTGGACAACTTGCCTGCGTGGGATGACGTGTTCAATTTTGAAACCCCGGAGTACCCTCTTGTGTTTGAAGAAGAGCATGTATTAGACGAGTCCCAGATGTTGGGCGAAACCTTAGCGTTTTCCTCGAACGAAGGTTTCAGCGACACTAGTAGTATTTTGCTTGCGGATTCCCTCATAGATTTCGACAAAGCGTGCCCTCCATCCACCTTCTGCCAAGTGGACGATTACTTCCAAGACATTTTGCTGGCTTCTGATCCTCTCGTTCTCCTCTGA	1026	0.5604	MEESILCKHTLHHTVTKKLLSPKKSQTNPTTDRRIVRISYTDPDATDSSSDDEPFPFVRQRIKRYVNQIEIETATTAAPNALANARKRPAAEPCRRQVKLHSGKKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAAMVYDNAAIRLRGPDALTNFVTPPLKEPPPAVAADVPELKVGVPEEASGSAYGYDSGDDHCHHNLASPTSVLHFRSNSSEENSEKTEEVLRECQGETETSLFDETGEFLALDNLPAWDDVFNFETPEYPLVFEEEHVLDESQMLGETLAFSSNEGFSDTSSILLADSLIDFDKACPPSTFCQVDDYFQDILLASDPLVLL	341

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco7g01383	341	SMART	rav1_2	105	168	IPR001471	GO:0003700\|GO:0006355
	Phco7g01383	341	MobiDBLite	consensus disorder prediction	20	53	-	-
	Phco7g01383	341	SUPERFAMILY	DNA-binding domain	105	162	IPR016177	GO:0003677
	Phco7g01383	341	Gene3D	AP2/ERF domain	104	163	IPR036955	GO:0003700\|GO:0006355
	Phco7g01383	341	ProSiteProfiles	AP2/ERF domain profile.	105	162	IPR001471	GO:0003700\|GO:0006355
	Phco7g01383	341	PANTHER	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	33	238	-	-
	Phco7g01383	341	CDD	AP2	104	161	IPR001471	GO:0003700\|GO:0006355
	Phco7g01383	341	FunFam	Ethylene-responsive transcription factor 2	104	163	-	-
	Phco7g01383	341	Pfam	AP2 domain	105	154	IPR001471	GO:0003700\|GO:0006355
	Phco7g01383	341	PRINTS	Ethylene responsive element binding protein signature	128	144	IPR001471	GO:0003700\|GO:0006355
	Phco7g01383	341	PRINTS	Ethylene responsive element binding protein signature	106	117	IPR001471	GO:0003700\|GO:0006355
	Phco7g01383	341	MobiDBLite	consensus disorder prediction	20	35	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco7g01383	Phco-Chr7	12553353	12554378	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Phco7g01383		AP2	8.7e-14	CL0081

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco7g01383	7	12553353	12554378	Phco7g01383	7	12553353	12554378	ECH