Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco7g01354 | ATGAGCCACCGCGGAATAGACCGGGATGACGACGACGATGATTACTTGGATGACGAGCAGGTTGCCGACTTCGAAGAGGAGGAGGACCGCCGAGGGCGCGGCGGGGGCAGGAAGCGTAGAAGATCTGGTTTCATTGACGATGACGCAGAGGAGGTAGATGAGGATGAAGAGGAGGAGGACGACGATGACGAGGATTTCGATGCCCGGGGCGGTCGCAGGCGCCAGTACAAGAAGGTTTCCGCTTCCAATTTTTTTGACGAGGAGGCCGTGGTGGATAGCGATGAGGAAGAGGAAGAGGAAGAAGGCGAAGACGACTTCATTGTTGAGGGTGGAGCCGATCTGCCCGAAGAAGATGATGGGAGAAGGATGCGTAATAGGCGTATGCTGCCACATCACCAAGAAGATCATGAAGATCTTGAAGCTGTGGCCAGAAGCATCCAGGAACGTTATGGAAGGCGTCTAACGGATTATGATGAAGAAACCACAGATGTAGAACAACAGGCTCTTTTGCCGTCTGTGAGAGATCCTAAGCTTTGGATGGTCAAATGCGCAATTGGTCATGAGAGAGAAACAGCTGTTTGCCTCATGCAAAAGTACATAAATAGGCCCTCTGAATTTCAAATCAGATCAGCGATTGCTCTTGATCATCTCAAAAATTATATATACGTGGAAGCAGATAAAGAAGCCCATGTCAGAGAGGCTTGCAAAGGTCTACGCAATATATTTGGCCAAAAAATAACTCTTGTCCCAATCAGAGAAATGACTGATGTTCTGTCAGTTGAAAGCAAAGCGATTGATCTTGCTAGGGATACCTGGGTTAGAATGAAGATAGGGACATATAAAGGGGACCTTGCCAAAGTAGTGGATGTCGATAATGTCCGGCAGAGGGTTACTGTCAAATTAATTCCAAGGATAGACCTACAGGCTCTCGCAAATAAGTTGGAAGGTAGGGAGGTTGTGAAAAAGAAGGCTTTTGTTCCTCCTCCTCGATTTATGAATGTTGATGAAGCAAGGGAATTGCATATCCGTGTGGAGCATAGACGCGATGCCTATGGTGAACGATTTGATGCAATTGGGGGCATGATGTTCAAAGATGGTTTCTTATACAAAACTGTATCAATAAAATCCATCAGTGCTCAGAACATCAAACCTAGTTTTGATGAGTTGGAAAAATTTCGTAAACCGGGTGAGAGTGGAGATGGTGATGTTGCTAGTTTGTCAACTTTGTTTGCAAACAGGAAGAAAGGGCACTTTATGAAAGGTGATGCAATTATTGTTGTCAAGGGTGATTTAAAGAACTTGAAGGGGAAGGTGGAGAAAGTTGATGAAGATAATGTTCATATAAGGCCAGAAATGGAGGGACTTCCAAAAACTATTGCTGTAAATGAAAAGGAGCTTTGTAAATATTTTGAGCCTGGAAACCACGTTAAGGTTGTTTCTGGTGCTCAAGAAGGGGCTACGGGCATGGTTGTGAAGGTGGAGCAGCATGTCTTGATCTTAATATCTGATACAACAAAAGAGCATATCCGTGTATTTGCAGATGATGTTGTAGAAAGTTCAGAAGTAACGACTGGAGTTACTCGAATTGGGGACTATGAACTTCGGGATCTTGTATTGCTAGATAATATGAGCTTTGGTGTGATAATCCGTGTAGAAAGTGAAGCATTTCACGTTCTGAAGGGGATTCCTGACAGACATGAAGTAGTTCTTGTTAAATTAAGAGAGATCAAATGCAAGATAGATAAGAAAATAAGCGTGCAGGATAGATTTAAGAATACAGTTTCATCAAAGGATGTTGTCCGGATTGTTGATGGTTCCAGCAAAGGGAAACAAGGTCCCGTGGAACACATATATAGAGGAGTCTTGTTCATCTTTGATCGCCATCATCTTGAACATGCGGGCTTTATATGTGCTAAGGCCCAATCATGTGTGGTAGTGGGAGGTTCACGCTCCAGTGGTGACAGAAATGGGGATGCCTACTCAAGATTTCCCACCCTTAGAAGCCCAAGTCGTATTCCACCATCTCCAAGGAGGTTTCCTCGAGGAGGGCCAATGGATTCTGGAGGGAGACATAGGGGTGGGAGGGGGCATGATGGTTTGGCAGGTACAACTGTTAAAGTACGTCAGGGTCCCTATAAAGGTTACCGTGGGCGTGTTATAGATGATAAAGGTACATCAGTTCGTGTTGAGCTGGAATCTCAAATGAAGGTTGTAACAGTTGACCGCAACCATATATCTGACAATGTGGCTATAACTCCATATCGTGATACATCTCGCTACGGAATGGGAAGTGAAACCCCAATGCATCCTTCTCGGACTCCCTTACATCCATATATGACTCCAATGAGAGATCCTGGAGCAACACCTATTCATGATGGAATGAGGACACCTATGCGTGACCGAGCATGGAATCCTTACACTCCAATGAGTCCTCCGAGGGACAACTGGGAAGATGGAAATCCAGGCTCTTGGGGAGCAAGTCCACAGTATCAGCCTGGAAGCCCTCCATCAAGACCTTATGAAGCACCGACTCCTGGTGCTGGTTGGGCCAGCACACCCGGTGGAAATTATAGTGAAGCTGGAACGCCTCGGGACAGTTCTGCCTATGCCAATGCTCCAAGCCCGTATTTACCATCAACACCTGGTGGGCAGCCTATGACACCAAGTTCAGCATCTTATCTTCCGGGCACTCCTGGAGGACAGCCTATGACTCCAGGCACTGGTGGTATGGACATGATGTCTCCAGTTTTAGGTGGGGACAATGAAGGCCCATGGTTTATACCAGATATATTAGTCAATGTACACCGGGCCGGAGACGAATCTGTTGGAGTTATAAGAGAGGTTCTTCCGGATGGTTCGTACAAGGTAGCTCTTGGATCTAGTGGTAATGGTGAAACGATTACAGCCCTTCCTAATGAAATGGAGGCTGTGGTACCAAGAAAATCAGACAAAATAAAGATTATGGGTGGGGCATTACGTGGTGCCACTGGAAAGTTGATTGGTGTAGATGGTACTGATGGAATTGTAAAGGTAGATGACACTTTGGATGTCAAGATTTTAGACTTAGTTATTTTGGCAAAATTAGCTCAACCATGA | 3096 | 0.4557 | MSHRGIDRDDDDDDYLDDEQVADFEEEEDRRGRGGGRKRRRSGFIDDDAEEVDEDEEEEDDDDEDFDARGGRRRQYKKVSASNFFDEEAVVDSDEEEEEEEGEDDFIVEGGADLPEEDDGRRMRNRRMLPHHQEDHEDLEAVARSIQERYGRRLTDYDEETTDVEQQALLPSVRDPKLWMVKCAIGHERETAVCLMQKYINRPSEFQIRSAIALDHLKNYIYVEADKEAHVREACKGLRNIFGQKITLVPIREMTDVLSVESKAIDLARDTWVRMKIGTYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVVKKKAFVPPPRFMNVDEARELHIRVEHRRDAYGERFDAIGGMMFKDGFLYKTVSIKSISAQNIKPSFDELEKFRKPGESGDGDVASLSTLFANRKKGHFMKGDAIIVVKGDLKNLKGKVEKVDEDNVHIRPEMEGLPKTIAVNEKELCKYFEPGNHVKVVSGAQEGATGMVVKVEQHVLILISDTTKEHIRVFADDVVESSEVTTGVTRIGDYELRDLVLLDNMSFGVIIRVESEAFHVLKGIPDRHEVVLVKLREIKCKIDKKISVQDRFKNTVSSKDVVRIVDGSSKGKQGPVEHIYRGVLFIFDRHHLEHAGFICAKAQSCVVVGGSRSSGDRNGDAYSRFPTLRSPSRIPPSPRRFPRGGPMDSGGRHRGGRGHDGLAGTTVKVRQGPYKGYRGRVIDDKGTSVRVELESQMKVVTVDRNHISDNVAITPYRDTSRYGMGSETPMHPSRTPLHPYMTPMRDPGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGASPQYQPGSPPSRPYEAPTPGAGWASTPGGNYSEAGTPRDSSAYANAPSPYLPSTPGGQPMTPSSASYLPGTPGGQPMTPGTGGMDMMSPVLGGDNEGPWFIPDILVNVHRAGDESVGVIREVLPDGSYKVALGSSGNGETITALPNEMEAVVPRKSDKIKIMGGALRGATGKLIGVDGTDGIVKVDDTLDVKILDLVILAKLAQP | 1031 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco7g01354 | 1031 | SMART | kow_9 | 978 | 1005 | IPR005824 | - | |
| Phco7g01354 | 1031 | SMART | kow_9 | 698 | 725 | IPR005824 | - | |
| Phco7g01354 | 1031 | SMART | kow_9 | 417 | 444 | IPR005824 | - | |
| Phco7g01354 | 1031 | SMART | kow_9 | 266 | 293 | IPR005824 | - | |
| Phco7g01354 | 1031 | SMART | kow_9 | 469 | 496 | IPR005824 | - | |
| Phco7g01354 | 1031 | SMART | kow_9 | 593 | 620 | IPR005824 | - | |
| Phco7g01354 | 1031 | FunFam | Transcription elongation factor SPT5 | 266 | 308 | - | - | |
| Phco7g01354 | 1031 | FunFam | Transcription elongation factor SPT5 | 472 | 521 | - | - | |
| Phco7g01354 | 1031 | SMART | nusgn_4 | 175 | 261 | IPR006645 | GO:0140673 | |
| Phco7g01354 | 1031 | Pfam | KOW motif | 472 | 497 | IPR005824 | - | |
| Phco7g01354 | 1031 | MobiDBLite | consensus disorder prediction | 26 | 47 | - | - | |
| Phco7g01354 | 1031 | MobiDBLite | consensus disorder prediction | 88 | 113 | - | - | |
| Phco7g01354 | 1031 | FunFam | Transcription elongation factor SPT5 | 685 | 748 | - | - | |
| Phco7g01354 | 1031 | MobiDBLite | consensus disorder prediction | 1 | 122 | - | - | |
| Phco7g01354 | 1031 | MobiDBLite | consensus disorder prediction | 11 | 25 | - | - | |
| Phco7g01354 | 1031 | CDD | KOW_Spt5_3 | 469 | 519 | IPR041976 | - | |
| Phco7g01354 | 1031 | MobiDBLite | consensus disorder prediction | 855 | 874 | - | - | |
| Phco7g01354 | 1031 | Pfam | Spt5 transcription elongation factor, acidic N-terminal | 84 | 171 | IPR022581 | - | |
| Phco7g01354 | 1031 | MobiDBLite | consensus disorder prediction | 649 | 702 | - | - | |
| Phco7g01354 | 1031 | CDD | KOW_Spt5_1 | 270 | 307 | IPR041973 | - | |
| Phco7g01354 | 1031 | FunFam | Transcription elongation factor SPT5 | 412 | 469 | - | - | |
| Phco7g01354 | 1031 | CDD | KOW_Spt5_6 | 972 | 1029 | IPR041980 | - | |
| Phco7g01354 | 1031 | PIRSF | Spt5 | 2 | 1031 | IPR017071 | GO:0006357|GO:0032784 | |
| Phco7g01354 | 1031 | Gene3D | - | 682 | 748 | IPR014722 | - | |
| Phco7g01354 | 1031 | ProSitePatterns | Ribosomal protein L24 signature. | 421 | 438 | IPR005825 | GO:0003735|GO:0005840|GO:0006412 | |
| Phco7g01354 | 1031 | MobiDBLite | consensus disorder prediction | 756 | 912 | - | - | |
| Phco7g01354 | 1031 | SUPERFAMILY | Translation proteins SH3-like domain | 410 | 448 | IPR008991 | - | |
| Phco7g01354 | 1031 | CDD | NGN_Euk | 177 | 259 | IPR039385 | - | |
| Phco7g01354 | 1031 | Gene3D | - | 412 | 469 | IPR014722 | - | |
| Phco7g01354 | 1031 | Pfam | Early transcription elongation factor of RNA pol II, NGN section | 177 | 258 | IPR005100 | - | |
| Phco7g01354 | 1031 | CDD | KOW_Spt5_4 | 597 | 639 | IPR041977 | - | |
| Phco7g01354 | 1031 | FunFam | Transcription elongation factor SPT5 | 157 | 259 | - | - | |
| Phco7g01354 | 1031 | Gene3D | - | 157 | 259 | IPR036735 | GO:0006355 | |
| Phco7g01354 | 1031 | SUPERFAMILY | Translation proteins SH3-like domain | 461 | 520 | IPR008991 | - | |
| Phco7g01354 | 1031 | MobiDBLite | consensus disorder prediction | 48 | 65 | - | - | |
| Phco7g01354 | 1031 | Gene3D | - | 472 | 521 | IPR014722 | - | |
| Phco7g01354 | 1031 | PANTHER | SUPPRESSOR OF TY 5 | 64 | 1008 | IPR039659 | GO:0006357|GO:0032784 | |
| Phco7g01354 | 1031 | MobiDBLite | consensus disorder prediction | 883 | 897 | - | - | |
| Phco7g01354 | 1031 | Gene3D | - | 266 | 308 | IPR014722 | - | |
| Phco7g01354 | 1031 | CDD | KOW_Spt5_2 | 418 | 468 | IPR041975 | - | |
| Phco7g01354 | 1031 | CDD | KOW_Spt5_5 | 700 | 746 | IPR041978 | - |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Phco7g01354 | 7 | 12259354 | 12269301 | Phco7g01354 | 7 | 12259354 | 12269301 | ECH |