Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01292 ATGGCAGCACTCTCGTATCCACCATTCTTCGCCCTTCAGAGAATCACTTCCACCGATACCAACACCAACGCTTTCTTCGTTCGCTCGCGTCCTTCTGTTCCTCCATGGCCTTGCCTACGACGACGTCGTTGTGCACCCGCTCTCGTCGCCGTCGCCTCCGTTAAGGAAAATATCGGCCGTGTTCAACAGCGTTTCACTGACTTCACGAGCTTGAACTATTGGGTTGTTCGCGACTACTACCGTCTCGTGAACTCTGTCAACGCCTTCGAGCGTCAGATTGAGGCGCTCTCCGATGAACAGCTGGCGGCGAAAACCTCCGAGTTTCGCCGCCGGCTCGCGCGAGGAGCCACGCTTGCCGACATTCAAGCTGAGGCGTTCGCTGTTGTTCGTGAAGCTGCTTGGAGAAAACTTAGAATGCGCCATTTCGATGTTCAGATTATTGGTGGGGCAGTGCTGCATGATGGTTCCATTGCTGAGATGAAAACCGGGGAGGGTAAAACCTTGGTTTCCACACTAGCTGCTTATCTAAATGCCCTAACCTCTGAGGGTGTTCATGTGGTAACTGTTAACGATTATTTAGCTCAGCGTGACGCTGAATGGATGGGACGTGTTCATCGTTTCTTAGGTCTCTCTGTCGGTCTTGTTCAGAGAGGAATGAATGCTGAAGAACGAAGAATCAACTACAGATGTGATATAACATATACCAATAATTCGGAGCTTGGCTTTGATTACCTGCGTGATAATCTGGCTGGAAATCGTGAACAACTTGTGATGAGATGGCCAAAGCCCTTTCATTTTGGAATCGTTGATGAAGTGGATTCTGTCTTGATAGACGAGGGAAGAAATCCTTTGTTAATCAGTGGTGAGGCTAGTAAAGATGCTGCACGATTCCCCGTTGCTGCAAAAGTAGCTGAACTGCTTGTACAGGGCATTCATTACAAAATTGAGCTTAAAGATAATTCTGTGGAGTTGACTGAGGAAGGAATTGCTCTTGCCGAAATGGCTTTAGAAACTAATGACCTTTGGGATGAAAATGATCCCTGGGCAAGATTTGTGATGAATGCTATAAAAGCTAAAGAATTCTATCGTCGAGATGTGCAATACATTGTCAGAGATGGAAAGGCTTTGATTATCAATGAGCTGACTGGGAGAGTTGAAGAGAAAAGGAGATGGTCTGAGGGGATTCACCAGGCTGTGGAGGCAAAGGAAGGTTTGAAGATTCAGGCAGATTCTCTTGTTGTGGCACAGATCACATACCAGTCATTATTCAAGCTCTATCCAAAGTTGTCAGGAATGACTGGGACTGCCAAAACAGAAGAGAAAGAGTTCTTAAAAATGTTTCAGATGCCAGTCATTGAAGTGCCCACAAATCTTCCTAATATTCGAAATGATTTACCAATTCAAGCTTTTGCTACTGCTCGTGGGAAATGGGAGCAAGTTCGCCGAGAAGTTGAATATATGTTTAGACAAGGTCGGCCTGTCTTAGTTGGGACTACTAGTGTAGAAAATTCAGAGCTTTTGTCTGGTCTGCTTAGGGAATGGAATATTCCTCATAATGTTCTGAATGCTAGACCCAAGTATGCTGCAAAAGAAGCTGAAGTTGTTGCACAAGCAGGACGGAAACATGCCATTACCCTCTCTACAAATATGGCAGGCAGGGGCACAGATATAATCCTCGGAGGAAATCCAAAAATGCTTGCCAGAGAAATTATAGAGGATAGCTTAATTTCATTTTTGACACGAGGGGATCCAAAAAACATTGAACTTGCAGAGGAAGCTATTTCACAAATGGTGCTTCCAAAGATAAAGGTTGGTTCATCATCAATGGCCTTATTGGCTAAGACAACCCTAATGGCCAAATATGTATCCAAAAGTGAGGGTAAAAGTTGGACATATCAGAAGGCTAAATCCTTTATCTTGGAGGCTATTGAAATGAATCTTTCATATAGTTTGGAAGAGCTGGAGAAGCTTGCTAATGAAGAATCTGAGGTCTACCCTCTTGGTCCAACTGTAGCACTTGCCTATCTGTCAGTTTTGAAGGATTGTGAAGAACACTGTTTGAATGAAGGTTCCGAGGTAAAAAGGCTTGGGGGACTTCATGTGATTGGTACATCTTTACATGAGTCCCGGAGAATAGATAACCAGTTGCGTGGCAGAGCAGGAAGACAAGGGGATCCAGGATCAACACGATTTATGGTCAGCTTGCAGGATGAGATGTTTCAGAAGTTCAATTTTGATACTGAATGGGCAGTGAGACTCATCTCAAAAATTACAAATGATGAGGATCTGCCAATTGAGGGTGATGCCATTGTAAAGCAGCTTTTGGCACTGCAAATCAATGCAGAAAAATTCTTCTTTGGCATAAGAAAGAACCTCGTTGAGTTTGATGAAGTATTGGAGGTGCAACGAAAGCATGTTTATGATCTAAGGCAATTAATCTTAACAGGAGATGATGAAAGCTGTTCCCAACACATACTCCAGTACATGCAAGCAGTGGTTGACGAGATCGTCTTCAATAATATTGATCCAGTGAAGCATCCACGTAGCTGGGGTTTGAGTAAGCTCTTGAAAGAGTTCGTGACTGTTGGTGGAAAGCTGTTGCATGAATCTTTTGGAGGAATTAGTGATCACACTTTGCTAAATTCACTTGGGCTACTGAATGATGTGAGTTCAGTTGATATTGTAAACTTTTCTCTTCCAAATTTGCCAGCACCTCCAAATGCCTTCAGGGGAATACACAGGAAGAGCTCGTCATTAAGACGATGGCTTGCTATTTGCACAGATGATTTAATTGGGAATGGGAAGTATCAAACCACTTCTAATCTTCTTCGCAAGTATCTTGGAGATTTTCTGATTGCTTCTTATTTAAATGTTGTTGAAGAGTCTGGTTATGATGAGAGACATGCAAAGGAAATTGAGAGGGCTGTTCTTTTGCAAACTCTTGATTGTTTCTGGAGAGATCATCTTGTAAACATGAATAAACTCAGCTCTGCGGTGAACATTAGGAGCTTTGGCCATAGAAATCCTCTTGAAGAGTATAAGATTGATGGTTGTCGGTTTTTTATCTCAATGCTCAGCGCCACTCGGAGGTTAACTGTAGAAGCACTCCTGCGGTATTGGACATCTCCAATGGAATCTGAAGAATTATTTTTATCGTGA 3159 0.4334 MAALSYPPFFALQRITSTDTNTNAFFVRSRPSVPPWPCLRRRRCAPALVAVASVKENIGRVQQRFTDFTSLNYWVVRDYYRLVNSVNAFERQIEALSDEQLAAKTSEFRRRLARGATLADIQAEAFAVVREAAWRKLRMRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTSEGVHVVTVNDYLAQRDAEWMGRVHRFLGLSVGLVQRGMNAEERRINYRCDITYTNNSELGFDYLRDNLAGNREQLVMRWPKPFHFGIVDEVDSVLIDEGRNPLLISGEASKDAARFPVAAKVAELLVQGIHYKIELKDNSVELTEEGIALAEMALETNDLWDENDPWARFVMNAIKAKEFYRRDVQYIVRDGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSLVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRNDLPIQAFATARGKWEQVRREVEYMFRQGRPVLVGTTSVENSELLSGLLREWNIPHNVLNARPKYAAKEAEVVAQAGRKHAITLSTNMAGRGTDIILGGNPKMLAREIIEDSLISFLTRGDPKNIELAEEAISQMVLPKIKVGSSSMALLAKTTLMAKYVSKSEGKSWTYQKAKSFILEAIEMNLSYSLEELEKLANEESEVYPLGPTVALAYLSVLKDCEEHCLNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFNFDTEWAVRLISKITNDEDLPIEGDAIVKQLLALQINAEKFFFGIRKNLVEFDEVLEVQRKHVYDLRQLILTGDDESCSQHILQYMQAVVDEIVFNNIDPVKHPRSWGLSKLLKEFVTVGGKLLHESFGGISDHTLLNSLGLLNDVSSVDIVNFSLPNLPAPPNAFRGIHRKSSSLRRWLAICTDDLIGNGKYQTTSNLLRKYLGDFLIASYLNVVEESGYDERHAKEIERAVLLQTLDCFWRDHLVNMNKLSSAVNIRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVEALLRYWTSPMESEELFLS 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01292 1052 FunFam Preprotein translocase SecA subunit 290 410 - -
Phco7g01292 1052 Gene3D - 80 457 IPR027417 -
Phco7g01292 1052 ProSiteProfiles SecA family profile. 61 766 IPR014018 -
Phco7g01292 1052 NCBIfam preprotein translocase subunit SecA 86 858 IPR000185 GO:0005524|GO:0006605|GO:0006886
Phco7g01292 1052 Hamap Protein translocase subunit SecA [secA]. 53 1042 IPR000185 GO:0005524|GO:0006605|GO:0006886
Phco7g01292 1052 FunFam Protein translocase subunit SecA 910 1039 - -
Phco7g01292 1052 PANTHER SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM 48 1049 IPR000185 GO:0005524|GO:0006605|GO:0006886
Phco7g01292 1052 FunFam Protein translocase subunit SecA 79 299 - -
Phco7g01292 1052 SUPERFAMILY Pre-protein crosslinking domain of SecA 288 409 IPR036670 GO:0016020|GO:0017038
Phco7g01292 1052 Pfam SecA DEAD-like domain 75 443 IPR011115 GO:0005524|GO:0016020|GO:0017038
Phco7g01292 1052 Pfam SecA Wing and Scaffold domain 764 1039 IPR011116 GO:0016020|GO:0017038
Phco7g01292 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 68 457 IPR027417 -
Phco7g01292 1052 CDD SF2_C_secA 462 734 IPR044722 -
Phco7g01292 1052 Gene3D - 290 410 - -
Phco7g01292 1052 Coils Coil 1052 1052 - -
Phco7g01292 1052 Coils Coil 640 660 - -
Phco7g01292 1052 SUPERFAMILY Helical scaffold and wing domains of SecA 770 867 IPR036266 -
Phco7g01292 1052 SMART SecA_PP_bind_2 289 400 IPR011130 GO:0016020|GO:0017038
Phco7g01292 1052 Gene3D Helical scaffold and wing domains of SecA 769 871 - -
Phco7g01292 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 459 747 IPR027417 -
Phco7g01292 1052 SUPERFAMILY Helical scaffold and wing domains of SecA 938 1049 IPR036266 -
Phco7g01292 1052 FunFam Protein translocase subunit SecA 769 888 - -
Phco7g01292 1052 SMART SecA_DEAD_2 65 444 IPR011115 GO:0005524|GO:0016020|GO:0017038
Phco7g01292 1052 CDD DEXDc_SecA 100 456 - -
Phco7g01292 1052 Gene3D Helical scaffold and wing domains of SecA 910 1042 - -
Phco7g01292 1052 Pfam SecA preprotein cross-linking domain 300 400 IPR011130 GO:0016020|GO:0017038
Phco7g01292 1052 Gene3D - 459 766 IPR027417 -
Phco7g01292 1052 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 147 310 IPR014001 -
Phco7g01292 1052 PRINTS SecA protein signature 381 403 IPR000185 GO:0005524|GO:0006605|GO:0006886
Phco7g01292 1052 PRINTS SecA protein signature 455 468 IPR000185 GO:0005524|GO:0006605|GO:0006886
Phco7g01292 1052 PRINTS SecA protein signature 159 173 IPR000185 GO:0005524|GO:0006605|GO:0006886
Phco7g01292 1052 PRINTS SecA protein signature 418 435 IPR000185 GO:0005524|GO:0006605|GO:0006886
Phco7g01292 1052 PRINTS SecA protein signature 121 145 IPR000185 GO:0005524|GO:0006605|GO:0006886
Phco7g01292 1052 PRINTS SecA protein signature 175 185 IPR000185 GO:0005524|GO:0006605|GO:0006886
Phco7g01292 1052 PRINTS SecA protein signature 228 248 IPR000185 GO:0005524|GO:0006605|GO:0006886
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01292 Phco-Chr7 11521057 11540953 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g01292 7 11521057 11540953 Phco7g01292 7 11521057 11540953 ECH