Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01291 ATGGAACTGCCGGAGTGCCCGGTGTGCCTTCAATCTTTCGACGACCGCGACGCAATTCCTCGTGTCTTGTCATGTGGACACTCCGTTTGCGAAGCTTGTCTCGCGGAGCTTCCGCAGCGGTACCCGAATACTATTCGGTGCCCCGCGTGCACCCAACTCGTGAAGTATCCTTCTCAACAAGGCCCTTCTTCTCTTCCCAAAAACATCGACCTCCTCAGACTCTCCCTCCAAAACTCCCCTTCCCCTTCTAATCATTCCCACAAACACAATCAACGGTCCACGATCAATTCTGGTTACGATCACTCTTCGTTCTGGTCCCCTGAGTTCTATGATGCATGGAAGAATTGGATTCTCCCGCACGACGCCGTTTTAACCGAAGATCATTGTCTTGGCCAGCTCAGTTCGTCCAAGGGTAGGGTTTATTTCGGAGTTAACAGCTGCGTGAGTCTCGCTCCGATTGTTTGTTTATCTCCTGGGAATGACTCTAAGTTTAGGTTTAGTTATGTTGCTTGGGTGATTAAGCGTTTGGAGAGGATGAGCGAGGTTGCGAGAGAGGAGTTAGCATGGATTCTAGAAGCTTCCGTGAGGCAGAGTAGGGTGTGCAGGGCTTTTGGGTTGTGGAGTGAAGGGGTGGAGGCGCCTCTGTATATGGTGTGTGAGAGGCAAAGTGGCAGTCTTTTAGACAAGTTTGGTGAATTGGGAAATGGGTTTGTTGGTGGGAATGAGGGTGGTTTGGAGTTGGACAGAGGTGGGATTTTGAGTTTTTTAATGATTGGGAGGGGTATATGTGAAGCCGTGCTTTCTTTGCATTTGGAGGGTTTGGTTGCTGGCTGTTTGGGGCTTTCTTGTTTCTCTTTTGACGAGCTCGGTGGGATTTGTGTTGATTTGAATGAGGTATTGGGGATAGGAAGGCAGTTGCATGCTGTTTCCGGTAAACATGAAAAAGAAGCAATGTGTAAAGATTGCTTGGAAAATGAGATTTTTGTAAGTCCTGAGGTTTTGTATGAGTTGCTGCACAAGAGGAGATCTGCTCCAGATAGTGGGCATTTGAGATATCCAATTGGGTATGGCTCGGATGTATGGTCATTGGCCCGTGTACTGCTGTGGCTTCTTATTGGAAATGAGCTTCCTCGGAATACCTTGGAAATGAATGAAGAGAATGGTAGTGATAGCACAGCTAGTTATGTGTGTTGGGTAGAGAAAGTTAGTTCTTTTTTGGAAGACAAACTAGGCTCTGAATATCTGTCACTGAGGAAGACTCTTTGCAAATGTTTGGACGTCAATCCAGGAAACCGTCCAGATGTGGTAGATGTAAGGAGGTCCATTCAGGATACGTTAGTCAAACCTCAATTTGAATTTCTGGGCAACTTAGAGGTCACAAAAAATAAGGATTGCACAGGTTACTGTTTGGTTCTAGGTGAGCTGTGTCTGTTGCCTAAGGAATGGTCTTATGAACCACGAGAACATGAGTTGCGGGAAAAAGAAATTGGTGGTCAGCCAAATTTTGTTCAAGATGGCAAAGACAAGTCTGATGAAGACTTTGCTGCTGGTTTATCTGGGGGACTGACTGAACTCAAAGATCTGCGAGGCCATCTTGATTGTGTCAGTGGATTGGCTGTTGGAGGCGGGTATTTGTTCAGCTCCTCATTTGATAAAACTGTTCGCGTATGGTCCTTGCAGGACCTTTCTCATTTACACACATTTAGAGGTCATGAGAATAAAGTCATGGCTCTAGTTTATGTAGATGAAGAAGAACCATTGTGCATAAGTGGTGACAGTGGAGGGGGCATATTTATTTGGGGAATTGCTTCCCATCTTAGGCAAGATCCCTTGAGGAAATGGAATGAGAAGAAGGATTGGCGTTTCAGTGGTATCCACTCCTTGGCTGTTTTCAAAAATCATTCTCTTTATACTGGAAGTGGAGATAGAACGATAAAAGCTTGGTCATTAAAGGATGAAACTTTGATATGCACAATGACTGGCCATAGGTCTGTAGTTTCCACACTTGCTGTGTGTGATGAGGTTCTTTACAGTGGTAGTTGGGATGGTACAGTTCGGTTGTGGAGTCTAAATGACCACTGTCCATTGACAGTTCTGGGGGAAGATACGCTTCCGGAGATGAAGTCTATCCTGGCTGTTACTGTAGATAGGCATTTGCTTGTTGCAGCACATGAGAATGGATGCATAAAGGTCTGGAGGAATGATGTGTTCATGAATTCCAAAACATTGCATAATGGGGCCATTTTTGCAATGAGTATGCATGGAAAATGTCTTTATACAGGAGGTTGGGACAAAGGTGTTAATATACAGGAATTATCTGGAGACGAGTTTGAACTGGATGTCATAGCATATGGATCCATTCCTTACAGCTCTGTTGCTACAGCTATATTATACAGCCAAGGAAAACTGTACGTTGGATATGCTGACAAGTCTATTAAGGTATTAATTCACTTCATCCAATTATTTTAA 2469 0.4467 MELPECPVCLQSFDDRDAIPRVLSCGHSVCEACLAELPQRYPNTIRCPACTQLVKYPSQQGPSSLPKNIDLLRLSLQNSPSPSNHSHKHNQRSTINSGYDHSSFWSPEFYDAWKNWILPHDAVLTEDHCLGQLSSSKGRVYFGVNSCVSLAPIVCLSPGNDSKFRFSYVAWVIKRLERMSEVAREELAWILEASVRQSRVCRAFGLWSEGVEAPLYMVCERQSGSLLDKFGELGNGFVGGNEGGLELDRGGILSFLMIGRGICEAVLSLHLEGLVAGCLGLSCFSFDELGGICVDLNEVLGIGRQLHAVSGKHEKEAMCKDCLENEIFVSPEVLYELLHKRRSAPDSGHLRYPIGYGSDVWSLARVLLWLLIGNELPRNTLEMNEENGSDSTASYVCWVEKVSSFLEDKLGSEYLSLRKTLCKCLDVNPGNRPDVVDVRRSIQDTLVKPQFEFLGNLEVTKNKDCTGYCLVLGELCLLPKEWSYEPREHELREKEIGGQPNFVQDGKDKSDEDFAAGLSGGLTELKDLRGHLDCVSGLAVGGGYLFSSSFDKTVRVWSLQDLSHLHTFRGHENKVMALVYVDEEEPLCISGDSGGGIFIWGIASHLRQDPLRKWNEKKDWRFSGIHSLAVFKNHSLYTGSGDRTIKAWSLKDETLICTMTGHRSVVSTLAVCDEVLYSGSWDGTVRLWSLNDHCPLTVLGEDTLPEMKSILAVTVDRHLLVAAHENGCIKVWRNDVFMNSKTLHNGAIFAMSMHGKCLYTGGWDKGVNIQELSGDEFELDVIAYGSIPYSSVATAILYSQGKLYVGYADKSIKVLIHFIQLF 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01291 822 CDD RING-HC_TRIM32_C-VII 4 53 - -
Phco7g01291 822 SMART ring_2 6 50 IPR001841 -
Phco7g01291 822 Gene3D - 605 816 IPR015943 GO:0005515
Phco7g01291 822 ProSiteProfiles Zinc finger RING-type profile. 6 51 IPR001841 -
Phco7g01291 822 Gene3D - 502 604 IPR015943 GO:0005515
Phco7g01291 822 ProSiteProfiles Protein kinase domain profile. 131 446 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco7g01291 822 PANTHER - 1 814 IPR044715 -
Phco7g01291 822 PRINTS G protein beta WD-40 repeat signature 636 650 IPR020472 -
Phco7g01291 822 PRINTS G protein beta WD-40 repeat signature 545 559 IPR020472 -
Phco7g01291 822 PRINTS G protein beta WD-40 repeat signature 676 690 IPR020472 -
Phco7g01291 822 SUPERFAMILY WD40 repeat-like 523 814 IPR036322 GO:0005515
Phco7g01291 822 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
Phco7g01291 822 SUPERFAMILY Protein kinase-like (PK-like) 196 450 IPR011009 -
Phco7g01291 822 Pfam WD domain, G-beta repeat 656 689 IPR001680 GO:0005515
Phco7g01291 822 Pfam WD domain, G-beta repeat 525 558 IPR001680 GO:0005515
Phco7g01291 822 Gene3D Transferase(Phosphotransferase) domain 1 253 453 - -
Phco7g01291 822 SMART WD40_4 521 558 IPR001680 GO:0005515
Phco7g01291 822 SMART WD40_4 615 649 IPR001680 GO:0005515
Phco7g01291 822 SMART WD40_4 734 771 IPR001680 GO:0005515
Phco7g01291 822 SMART WD40_4 692 733 IPR001680 GO:0005515
Phco7g01291 822 SMART WD40_4 561 601 IPR001680 GO:0005515
Phco7g01291 822 SMART WD40_4 652 689 IPR001680 GO:0005515
Phco7g01291 822 ProSiteProfiles Trp-Asp (WD) repeats profile. 528 567 IPR001680 GO:0005515
Phco7g01291 822 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 659 691 - -
Phco7g01291 822 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 88 IPR013083 -
Phco7g01291 822 ProSiteProfiles Trp-Asp (WD) repeats profile. 659 691 IPR001680 GO:0005515
Phco7g01291 822 SUPERFAMILY RING/U-box 5 59 - -
Phco7g01291 822 Pfam RING-type zinc-finger 6 48 IPR027370 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01291 Phco-Chr7 11514807 11518810 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g01291 7 11514807 11518810 Phco7g01291 7 11514807 11518810 ECH