Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01254 ATGTTGGGAGGAACAATGGCCGGAAGTGCATCAAAGGTTGTCTTCTCCCTGTTGGTGACTTTGGCCATTACCATCCCATGCCTTGAGGCTGGCATTGCTGAATTTGATGACTTTCTTAAAGCTCAATCTGAGAAAGCCCACGAAATCGCTCTTCAGTCCTATGTACCCACACCCGAGTTCATCACCAGTGAACTGAATTACCACGTCCATCTTTCAATGCAGAACACCACTAGGAGGGGACTGAAGGCAGGGAACAATGACGCCGGAGCGCCTTGTGATAGCAGCAACCCCATTGACAACTGCTGGAGGTGCAACAAAGACTGGGCCAAGGACAGGTACAGGCTAGCCAAATGCGGAAAAGGGTTTGGAAGACGCGCAGTCGGAGGCCTCGGTGGACCCATCTATGTCGTCACTGATAACTCCGATGAGGACATGATTAACCCTAAAGAAGGAACCCTCCGCTATGCTGTCACTCAAAAGGGTCCATTGTGGATCACCTTCGCACGTAGCATGATCATCACTCTGCAACAGGAGCTGTTGATTTCCTCCGACAAGACCATCGATGGTCGCGGCGCCAACGTTCAGATCAGGGATGGTGGTGGCCTAACTATGCAGTTCGTGAACAACGTTATCATCCACGGGATTCGCGTGAAGAACATTGTGTCTAAGGAGGGTGGCATGATGAGGGACTCTTACAACCACGTTGGACTGAGAACCAGGAGTGATGGTGATGCCATCTCCCTTTTCGGTGCCTCCAACATCTGGATCGATCATGTTTCCCTCTCTAACTCTGCTGACGGACTTATTGATGTCATCCAAGGCTCCACTGCCATCACCATCTCTAACTGCCACATGACCAGACATAACGACGTTATGCTGTTTGGTGCTACTGATACTTACTCTGGAGACAAGATCATGCAGATTACAGTGGCATTCAACCACTTCGGGCAGGGACTGATTCAGAGGATGCCAAGGTGCAGAATGGGATTCTTTCACGTTCTGAACAACGATTACACTCACTGGATGATGTACGCAATAGGAGGAAGCGCAGCGCCAACGATTCTGAGCCAGGGAAACCGATTCATTGCCCCCAACAACGAGGCTGCAAAGGAGATAACACATAGGGTCGACGCAACACCAGAAGTGTGGAAGAACTGGCAGTGGCAATCAGACATGGACCTATTGATGAATGGTGCCAAGTTCAACACTTCAGGGTCACCAATAACGATGAAATACAAGAAGGGTCTGATAATGAAGCCAAGAGATGGCACTCACGTCAGCAGGCTTACACGGCATGCTGGTGCCCTCAACTGCTTTGTTGGGTTGCCTTGCTAG 1335 0.5026 MLGGTMAGSASKVVFSLLVTLAITIPCLEAGIAEFDDFLKAQSEKAHEIALQSYVPTPEFITSELNYHVHLSMQNTTRRGLKAGNNDAGAPCDSSNPIDNCWRCNKDWAKDRYRLAKCGKGFGRRAVGGLGGPIYVVTDNSDEDMINPKEGTLRYAVTQKGPLWITFARSMIITLQQELLISSDKTIDGRGANVQIRDGGGLTMQFVNNVIIHGIRVKNIVSKEGGMMRDSYNHVGLRTRSDGDAISLFGASNIWIDHVSLSNSADGLIDVIQGSTAITISNCHMTRHNDVMLFGATDTYSGDKIMQITVAFNHFGQGLIQRMPRCRMGFFHVLNNDYTHWMMYAIGGSAAPTILSQGNRFIAPNNEAAKEITHRVDATPEVWKNWQWQSDMDLLMNGAKFNTSGSPITMKYKKGLIMKPRDGTHVSRLTRHAGALNCFVGLPC 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01254 444 PRINTS Pollen allergen Amb family signature 242 263 IPR018082 -
Phco7g01254 444 PRINTS Pollen allergen Amb family signature 344 363 IPR018082 -
Phco7g01254 444 PRINTS Pollen allergen Amb family signature 386 410 IPR018082 -
Phco7g01254 444 PRINTS Pollen allergen Amb family signature 415 438 IPR018082 -
Phco7g01254 444 PRINTS Pollen allergen Amb family signature 178 194 IPR018082 -
Phco7g01254 444 PRINTS Pollen allergen Amb family signature 118 135 IPR018082 -
Phco7g01254 444 PRINTS Pollen allergen Amb family signature 322 341 IPR018082 -
Phco7g01254 444 PRINTS Pollen allergen Amb family signature 142 167 IPR018082 -
Phco7g01254 444 PANTHER PECTATE LYASE 18-RELATED 47 441 IPR045032 GO:0030570
Phco7g01254 444 Pfam Pectate lyase, N terminus 32 81 IPR007524 GO:0030570
Phco7g01254 444 Gene3D - 95 437 IPR012334 -
Phco7g01254 444 SMART amb_all 170 367 IPR002022 -
Phco7g01254 444 Pfam Pectate lyase 179 361 IPR002022 -
Phco7g01254 444 SUPERFAMILY Pectin lyase-like 96 435 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01254 Phco-Chr7 11127911 11129245 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g01254 7 11127911 11129245 Phco7g01254 7 11127911 11129245 ECH