Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01238 ATGGATCTAGTGTTTGGGGGCAGAGTGATAAACATTGTCCTTGCGTCTCTATGGAACACACCTGTTTTCTACTCTAAACTTTCTTTAGCTTTTCAAAGTGAAACTTTTCCCCTCCCCAACACAGCACAACACAATACTCTTCTCTCTGTGTCTTCACTTGCAGAGAGGGAGAACACACCTCACAAAACCCTAAACTTCTTCCTCTTGGCTAATAAACTTAAACCCGTTTCACTCTCACTGTGTCTTTCTATTTTCAGAATGCCAAGCCCAAAGCAGCTTCTGCAGGCTACAGTTTTCCTCTCGTTACTTGTTCAGGCCCTGTGCAAATCCACCATCGAGCCATGTTCCAACTCCGACTCATGCAACGCGCTTCTGGGATACACCCTTTACACTGACCTCAAAGTCTCCCAAGTGGCGTCGCTCTTCCAAATCGACCCCATCGCGCTTCTCACCGCCAATGCCATCGACATCTCCTACCCCGACGTCGAGCACCACATCCTCCCTTCCAACCTCTTCCTCAAGATCCCCATTTCCTGCTCCTGCGTCGACGGCATTCGCAAGTCCGTCGCCACCAACTACAAGACTCGCCCCTCCGACACCCTCTCCTCTATCGCCGACTCCGTCTACGGCGGCCTCGTCTCCTCCGACCAGCTACGTGAGGCCAATTCCATTCCCGACCCCTCCGTCCTCGATGTGGGTCAGAACCTCGTCGTGCCTCTCCCCTGCACCTGCTTCAACGGCTCCGACAACTCTCTCCCTGCCATTTACCTCTCTTACGTGGTTCGCCCCGTTGATTCCCTCGCTGCCATTGCTGCCAGGTACTTCACCACGCTCACAGATTTGATGAATGTCAATGCCATGGGAAGCATTGCTATTAACGACGGGGATATCCTTGCTGTTCCAGTACCCGCCTGTGCTTCGAATTTTCCTAAATCCGCCTCTGATTTTGGCTTGCTTGTCCCCAATGGAAGCTATGCCATTACCGCGGGACACTGTGTCCAGTGTAGCTGTGGTCCGAGAAACCTCAACTTGTACTGTATGCCGGCTTCTCTCGCTGTTTCTTGCTCCAGCATGCAATGCAGAGGCAGCAATCTTATGCTTGGGAATGTTACGGTGCAGCAGACTAGTGGTGGTTGCAATGTTACTTCTTGCAATTATGATGGCATTGTTAATGGCACCATAGCAACAACGTTGTCCCCTTCTCTTCAGCCTCGATGTCCAGGTCCACAGGAATTCCCTCCTCTTGTTGCCCCTCCCACCACCGTTGCAAAAGACACAGTGTTTGGACCAGCACCAGCACCACTGTTCGATGGAGCAGGTCCTACATCACCCATACCCTCACTGGTTCCTTCATCGGGGCTTCCAGGATTCTCTCCTGCAAATGGTCCTATTAGTGGCATTTCTTCTGGTGCTTCTGCTGCATGCTCCTTGGTGAAACCATTACCAATTTTGACGCATGCACTTGTGTTATTGCTTGTCAAGTTGATGATACCTGTGGCATTGTAA 1506 0.5126 MDLVFGGRVINIVLASLWNTPVFYSKLSLAFQSETFPLPNTAQHNTLLSVSSLAERENTPHKTLNFFLLANKLKPVSLSLCLSIFRMPSPKQLLQATVFLSLLVQALCKSTIEPCSNSDSCNALLGYTLYTDLKVSQVASLFQIDPIALLTANAIDISYPDVEHHILPSNLFLKIPISCSCVDGIRKSVATNYKTRPSDTLSSIADSVYGGLVSSDQLREANSIPDPSVLDVGQNLVVPLPCTCFNGSDNSLPAIYLSYVVRPVDSLAAIAARYFTTLTDLMNVNAMGSIAINDGDILAVPVPACASNFPKSASDFGLLVPNGSYAITAGHCVQCSCGPRNLNLYCMPASLAVSCSSMQCRGSNLMLGNVTVQQTSGGCNVTSCNYDGIVNGTIATTLSPSLQPRCPGPQEFPPLVAPPTTVAKDTVFGPAPAPLFDGAGPTSPIPSLVPSSGLPGFSPANGPISGISSGASAACSLVKPLPILTHALVLLLVKLMIPVAL 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01238 501 SMART LysM_2 258 301 IPR018392 -
Phco7g01238 501 SMART LysM_2 192 239 IPR018392 -
Phco7g01238 501 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 94 410 - -
Phco7g01238 501 Pfam LysM domain 259 300 IPR018392 -
Phco7g01238 501 Pfam LysM domain 193 239 IPR018392 -
Phco7g01238 501 Gene3D LysM domain 185 245 IPR036779 -
Phco7g01238 501 ProSiteProfiles LysM domain profile. 191 238 IPR018392 -
Phco7g01238 501 Gene3D LysM domain 247 312 IPR036779 -
Phco7g01238 501 SUPERFAMILY LysM domain 257 302 IPR036779 -
Phco7g01238 501 ProSiteProfiles LysM domain profile. 257 300 IPR018392 -
Phco7g01238 501 CDD LysM 193 238 IPR018392 -
Phco7g01238 501 CDD LysM 258 285 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01238 Phco-Chr7 10969496 10973418 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g01238 7 10969496 10973418 Phco7g01238 7 10969496 10973418 ECH