Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01192 ATGGAAAACGCCGATGTATTCTTGGGCTTACAGGACTTCCTCGAGCGCATGCGGCAGCCCTCCGCCGCTGAGTTCGTTAAAGCAATCAAAAGTTTTGTCGTTTCGTTTTCGAACAATGCTCCTGATCCCGAGAGGGACAGTGCCTTGGTTCAAGCGTTCCTTTCGAAAATGGAAGCGGATTTCAGGGCTCATCCACTTTGGGCTGGTTGCTCTGAGGAGGAGCTCGAAAGTGCCGGTGAAGGGCTTGAGAAGTATGTCATGACAAAGTTATTTGCTCGTGTATTTGCTTCAGTTCCAGATGATGTAAAACTTGATGACCAACTTTCTGAGAAGATGGCTTTGATTCAACAATTTGTTCGACCTGAAAATTTGGATATCAAGCCACCATTTCAGAATGAATCATCATGGCTGCTCGCACAGAAAGAATTACAGAAGATCAACATGTACAAAGCACCCAGGGACAAACTTGTGTGTATTCTGAATTGTTGCAGGGTTATTAGCAACTTGCTGCTTAATGCTTCGCTTGCTTCCAAAGAGAATCCTCCGGGAGCTGATGAATTTCTTCCCGTGCTTATTTATGTAACCCTAAAGGCAAACCCTCCACAACTGCACTCAAATCTACTGTACATACAAAGGTTTAGGCATCAATCTCGATTGGTTGCAGAAGCAGCATATTATTTTACCAACATGCTCTCTGCTGAGTCCTTCATCTCAAACATTGATGCAAAAGCCATTTCAATGGATGAAGCTGAGTTTGAGAGTAGCATGGAATTTGCTCGTGCTATGCTTTCAGGCATTTCAGTTGATACGCAAGATCCCGGTTCACCATATCAAAATAATGGACAGCATCCAATAGCAGAACCCACTAGGCACAAAAATAAAGCTTTGAATGATAATAAGGACCCTGCACTACGAACTCCGTCCTCTGTGGCAAGATCTGAAAGCAAGAAAGTTGCTTTTGCAGATGAATTACTGATCACAAAAGTTCCATCCCTCTCGGATTTGGAGAATAAAGGGGCAAGTATGATTTTGAAGGAGGACAAGTTGAATGAAGTTTTCGGGGGGTTTCCATATTTATTTGCTAGTGTAGGAGATCTAACAGTAAGTGATGTTGAAGACCTGCTAAATAATTACAAACAACTTGTTTTCAAGTATGTCTCTCTTTCTAAAGGGTTAGGCGTCTCTCCAACATCCCAGCCGCCAGCCGCCCAAAATAATTCTGAAGACCGTGTTGAAACAACAATAGATTCTTCAGACGGTGTTCATCTAGATGGGAATAATAAATCAGAAGAAGCTATTGATACAACAGAGGATAGTTCAAATAAAGTTTCTCCTCTTGAGGAGAAAATAATTGAGTCTGGTCTGCCACAGGATGAGCCAGCTGCTCCTGAGGAGGGTGATGCCCCCCTAAAGTAA 1416 0.4294 MENADVFLGLQDFLERMRQPSAAEFVKAIKSFVVSFSNNAPDPERDSALVQAFLSKMEADFRAHPLWAGCSEEELESAGEGLEKYVMTKLFARVFASVPDDVKLDDQLSEKMALIQQFVRPENLDIKPPFQNESSWLLAQKELQKINMYKAPRDKLVCILNCCRVISNLLLNASLASKENPPGADEFLPVLIYVTLKANPPQLHSNLLYIQRFRHQSRLVAEAAYYFTNMLSAESFISNIDAKAISMDEAEFESSMEFARAMLSGISVDTQDPGSPYQNNGQHPIAEPTRHKNKALNDNKDPALRTPSSVARSESKKVAFADELLITKVPSLSDLENKGASMILKEDKLNEVFGGFPYLFASVGDLTVSDVEDLLNNYKQLVFKYVSLSKGLGVSPTSQPPAAQNNSEDRVETTIDSSDGVHLDGNNKSEEAIDTTEDSSNKVSPLEEKIIESGLPQDEPAAPEEGDAPLK 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01192 471 Gene3D VPS9 domain 99 265 IPR037191 -
Phco7g01192 471 ProSiteProfiles VPS9 domain profile. 102 246 IPR003123 -
Phco7g01192 471 Gene3D - 17 97 - -
Phco7g01192 471 FunFam Vacuolar protein sorting-associated protein 9A 99 265 - -
Phco7g01192 471 MobiDBLite consensus disorder prediction 269 310 - -
Phco7g01192 471 Pfam Domain of unknown function (DUF5601) 27 91 IPR041545 -
Phco7g01192 471 SMART vps9_2 135 254 IPR003123 -
Phco7g01192 471 PANTHER RAB GDP/GTP EXCHANGE FACTOR 7 387 IPR045046 GO:0005085|GO:0016192
Phco7g01192 471 MobiDBLite consensus disorder prediction 269 286 - -
Phco7g01192 471 MobiDBLite consensus disorder prediction 393 471 - -
Phco7g01192 471 Pfam Vacuolar sorting protein 9 (VPS9) domain 138 241 IPR003123 -
Phco7g01192 471 MobiDBLite consensus disorder prediction 412 445 - -
Phco7g01192 471 SUPERFAMILY VPS9 domain 11 256 IPR037191 -
Phco7g01192 471 MobiDBLite consensus disorder prediction 393 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01192 Phco-Chr7 10331380 10337413 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g01192 7 10331380 10337413 Phco7g01192 7 10331380 10337413 ECH