Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01189 ATGGCTACCTTTCTCTCCAATCAATCTCTCTTGGCTTCTTGTCCCTGTTCTACTCCCTTCTCTTCAAAGCCCTTTCAAACCCTAAAACCCAAAATCATATCTTTTCCATTTCGGGGGTTTCCACGCCCCCTAAATTCCTCTCTCAATCGAAGAACCCCATTAAAGTATTCTCAAGATTCCCCTCCAACTAGAAATGACGAGACAGGTGAGACCCGGAAAGATTTAAGAGGGATAGACGGTGATGAAGATAAAAAGCCATTGCCTAGTTTAATGGTCCTCCTTGAAGCATACAAGGAAGCCTTTTTTAATGGTGATGAAAATGGTGTTGCTCTGATTGAAGAGGAAATATATTCGGCAGTAAATAGAAAAAATAATTTGATTCAGAAAGTATCAAGTTTATCAGCAGACAAAGCTACTTCCAAGGATAGATATTTTCGATTACAAGCTGATTTTGACAATTTTAGGAAAAGATTTGACAAAGAAAGACTTAGCATCCAATCTGATGCCCAACAAGAACTCATTGAAAAGCTTTTGTTGATGGTGGACAGTTTTGAGAAAACAAAACAGCATATTAAAGCAGCAACAGAGAAAGAGAAGAAAATTGATGTTAGCTATCAAGGCATTTACAAACAATTTGTAGAGATTCTGAGGAGTCATCATGTTTCAGTAGTAGCAACAGTGGGCAAGCCGTTTAATCCCTTGCAACATGAAGCCGTTGCACGTGAGGAGTCAACAGAGTTCAAGAAAGGGATTATAATTAAAGAATCCCGACGTGGTTTCTTGCTCAGAGATCGAGTTCTAAGGCCAGCCCTCGTGAAGGTTTCATTAGGTCCTGGAACTAAGAAATCTCCACTGTCTCCTGACAACTCCATGGAGCAACCTTCAACAGCTGCTGGAATAGATGAAAGATAG 912 0.4002 MATFLSNQSLLASCPCSTPFSSKPFQTLKPKIISFPFRGFPRPLNSSLNRRTPLKYSQDSPPTRNDETGETRKDLRGIDGDEDKKPLPSLMVLLEAYKEAFFNGDENGVALIEEEIYSAVNRKNNLIQKVSSLSADKATSKDRYFRLQADFDNFRKRFDKERLSIQSDAQQELIEKLLLMVDSFEKTKQHIKAATEKEKKIDVSYQGIYKQFVEILRSHHVSVVATVGKPFNPLQHEAVAREESTEFKKGIIIKESRRGFLLRDRVLRPALVKVSLGPGTKKSPLSPDNSMEQPSTAAGIDER 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01189 303 Pfam GrpE 118 275 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Phco7g01189 303 ProSitePatterns grpE protein signature. 231 274 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Phco7g01189 303 CDD GrpE 141 274 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Phco7g01189 303 MobiDBLite consensus disorder prediction 44 82 - -
Phco7g01189 303 MobiDBLite consensus disorder prediction 45 64 - -
Phco7g01189 303 MobiDBLite consensus disorder prediction 282 296 - -
Phco7g01189 303 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 125 219 IPR013805 -
Phco7g01189 303 Gene3D Head domain of nucleotide exchange factor GrpE 221 275 IPR009012 GO:0006457
Phco7g01189 303 PRINTS GrpE protein signature 145 161 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Phco7g01189 303 PRINTS GrpE protein signature 228 243 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Phco7g01189 303 PRINTS GrpE protein signature 173 188 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Phco7g01189 303 PRINTS GrpE protein signature 255 274 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Phco7g01189 303 PANTHER GRPE PROTEIN 88 275 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Phco7g01189 303 FunFam Protein GrpE 220 275 - -
Phco7g01189 303 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 222 276 IPR009012 GO:0006457
Phco7g01189 303 Hamap Protein GrpE [grpE]. 65 276 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Phco7g01189 303 Gene3D - 109 217 IPR013805 -
Phco7g01189 303 MobiDBLite consensus disorder prediction 65 82 - -
Phco7g01189 303 MobiDBLite consensus disorder prediction 276 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01189 Phco-Chr7 10300721 10305328 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g01189 7 10300721 10305328 Phco7g01189 7 10300721 10305328 ECH