Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01151 ATGGAGCACTTCAACAACGACGATCTTGAGTGCGTCGGCGATTACTACTACGACGACGACGTTCCTGATTTCCAAGGCCACACCTCCGCCGACATTCTTCCTCAGCAACCCTCCCATGCCGACTATCACGATTCCGACTTCGACGTTGACGACGAAGATCTCCAAACCAGTAATGCAAAGACTGATACCACCGCTTCAGAAGCCAGAAACGGGAAAGACATCCAGGGAATCCCCTGGGAGAGGCTCAATTATAGCAGAGACGAGTACCGCGAGACTCGATTGAAGCAGTATAAAAATTACGAGAGCCTCTCCCGTTCACGCCACCACCTTAATAAGGAGTGCTTGAACGTGCAGAAGGGGAAGACCTTCTATGACTTCTTCTTCAATACAAGGCTCGTCAAGTCCACAATCGTGCATTTTCAGCTGAGGAATTTGTTGTGGGCAACTTCGAAGCATGATGTATACCTTATGCAAAACTACTCAGTTATGCACTGGTCCGCAGTATTACGAAGGGGTAAAGAAGTGCTTAACGTAGCCAAACCAATTGTTCCGAACCTTAAGCGTCCTGGGTTTTTGGCTCAGCCTGTCTCCAGAGTGCAAATAAGCACCATGACTGTTAAGGAAAATCTGATGGTGGCCGGTGGTTTCCATGGCGAGCTTATATGCAAGAATTTGAAGCAGCCTGGAGTTCTATTTTGTGGTAAAATAACTACAGATGATACTGCCATAACCAATGCTGTGGATGTTTACCGCAATCCAGCTGGATCGTTGAGAGTTATCACAGCAAATAATGATTCCCAAGTTCGGGTTTTTGATGCAGAGAATTTTGCTTCTCTTGGTTGTTTCAACTATGATTGGTCTGTTAATAATATTTCTGTTAGCCCGGATGGGAAGTTGTTAGCTGTACTTGGGGACAGCACTGAGTGCTTGATAGCTGATGCTAACACTGGAAAGATTACTGGAAGCTTAAAAGGTCACTTGGACTACTCTTTTGCATCGGCTTGGCACCCAGATGGACGGATATTGGCTACTGGGAATCAGGACACAACTTGCAGGTTGTGGGACATCAGAAATCTTTCTCAATCTCTAGCTGTGTTAAAGGGAAGAATGGGTGCAATAAGAGCCTTACGATTCACATCTGATGGACGGTTTTTGGCCATGGCTGAGCCTGCAGACTTCGTCCATATTTTTGACTCTCATTCTGGTTATGTACAAGGTCAAGAAATAGATCTATTTGGCGAGATTGCTGGTATATCCTTTAGCCCAGACACAGAGGCTCTATTTGTGGGCATTGCTGACCGAACCTATGGTAGCTTGTTAGAGTTCGTCAGAAAACGTTACAATTATTACCTGGACTCCATGTTTTAA 1368 0.4547 MEHFNNDDLECVGDYYYDDDVPDFQGHTSADILPQQPSHADYHDSDFDVDDEDLQTSNAKTDTTASEARNGKDIQGIPWERLNYSRDEYRETRLKQYKNYESLSRSRHHLNKECLNVQKGKTFYDFFFNTRLVKSTIVHFQLRNLLWATSKHDVYLMQNYSVMHWSAVLRRGKEVLNVAKPIVPNLKRPGFLAQPVSRVQISTMTVKENLMVAGGFHGELICKNLKQPGVLFCGKITTDDTAITNAVDVYRNPAGSLRVITANNDSQVRVFDAENFASLGCFNYDWSVNNISVSPDGKLLAVLGDSTECLIADANTGKITGSLKGHLDYSFASAWHPDGRILATGNQDTTCRLWDIRNLSQSLAVLKGRMGAIRALRFTSDGRFLAMAEPADFVHIFDSHSGYVQGQEIDLFGEIAGISFSPDTEALFVGIADRTYGSLLEFVRKRYNYYLDSMF 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01151 455 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 27 452 - -
Phco7g01151 455 ProSitePatterns Trp-Asp (WD) repeats signature. 342 356 IPR019775 -
Phco7g01151 455 FunFam WD-40 repeat family protein 236 452 - -
Phco7g01151 455 MobiDBLite consensus disorder prediction 26 70 - -
Phco7g01151 455 SMART WD40_4 275 313 IPR001680 GO:0005515
Phco7g01151 455 SMART WD40_4 316 355 IPR001680 GO:0005515
Phco7g01151 455 SMART WD40_4 359 398 IPR001680 GO:0005515
Phco7g01151 455 Gene3D - 234 444 IPR015943 GO:0005515
Phco7g01151 455 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 323 358 - -
Phco7g01151 455 ProSiteProfiles Trp-Asp (WD) repeats profile. 323 364 IPR001680 GO:0005515
Phco7g01151 455 Pfam WD domain, G-beta repeat 318 355 IPR001680 GO:0005515
Phco7g01151 455 SUPERFAMILY WD40 repeat-like 195 435 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01151 Phco-Chr7 9906343 9910883 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g01151 7 9906343 9910883 Phco7g01151 7 9906343 9910883 ECH